Wall clock time and date at job start Mon Mar 30 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47366 * 257.29532 * 3 2 1 5 5 C 1.36920 * 120.00167 * 272.56996 * 4 3 2 6 6 H 1.07989 * 119.99958 * 187.89390 * 5 4 3 7 7 C 1.39009 * 119.99717 * 7.88599 * 5 4 3 8 8 N 1.31392 * 119.99920 * 24.63831 * 7 5 4 9 9 Si 1.86794 * 119.99635 * 204.63724 * 7 5 4 10 10 H 1.48499 * 109.47174 * 94.99289 * 9 7 5 11 11 H 1.48509 * 109.47183 * 214.99026 * 9 7 5 12 12 H 1.48495 * 109.47477 * 334.99393 * 9 7 5 13 13 C 1.34776 * 119.99748 * 92.56322 * 4 3 2 14 14 O 1.21624 * 119.99629 * 183.71649 * 13 4 3 15 15 C 1.47466 * 119.99994 * 3.71556 * 13 4 3 16 16 C 1.41806 * 120.08913 * 307.92356 * 15 13 4 17 17 C 1.35586 * 119.54689 * 180.02562 * 16 15 13 18 18 C 1.41175 * 119.65594 * 0.02562 * 17 16 15 19 19 N 1.32452 * 132.02230 * 179.97438 * 18 17 16 20 20 C 1.33577 * 109.23553 * 180.02562 * 19 18 17 21 21 C 1.34998 * 108.65538 * 359.95734 * 20 19 18 22 22 N 1.37015 * 107.13850 * 0.06277 * 21 20 19 23 23 C 1.35949 * 132.37758 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47332 * 137.29469 * 3 2 1 25 25 H 1.09006 * 109.47156 * 17.29615 * 3 2 1 26 26 H 0.97000 * 119.99757 * 179.97438 * 8 7 5 27 27 H 1.07999 * 120.22863 * 0.02562 * 16 15 13 28 28 H 1.07995 * 120.17163 * 179.73018 * 17 16 15 29 29 H 1.08004 * 125.67444 * 180.02562 * 20 19 18 30 30 H 1.08009 * 126.43240 * 180.02562 * 21 20 19 31 31 H 1.07996 * 119.82657 * 359.94943 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0962 0.3046 1.3474 5 6 3.2737 1.6061 1.7339 6 1 3.7518 1.8292 2.6761 7 6 2.8386 2.6403 0.9132 8 7 1.8688 2.4316 0.0516 9 14 3.6326 4.3267 1.0354 10 1 4.7059 4.4435 0.0158 11 1 2.6078 5.3748 0.7977 12 1 4.2155 4.5024 2.3899 13 6 3.3705 -0.6969 2.2066 14 8 3.7109 -0.4440 3.3465 15 6 3.2578 -2.0992 1.7646 16 6 2.0665 -2.5560 1.1456 17 6 1.9746 -3.8477 0.7440 18 6 3.0646 -4.7216 0.9470 19 7 3.2397 -6.0025 0.6589 20 6 4.4582 -6.3801 1.0551 21 6 5.0805 -5.3180 1.6094 22 7 4.2093 -4.2623 1.5480 23 6 4.3078 -2.9682 1.9528 24 1 2.9710 0.7560 -0.6970 25 1 2.9717 -0.9804 -0.3056 26 1 1.5650 3.1534 -0.5208 27 1 1.2381 -1.8796 0.9952 28 1 1.0705 -4.2074 0.2755 29 1 4.8765 -7.3701 0.9487 30 1 6.0778 -5.3033 2.0239 31 1 5.2149 -2.6206 2.4247 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340668267.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:40 Heat of formation + Delta-G solvation = 92.868340 kcal Electronic energy + Delta-G solvation = -19823.595297 eV Core-core repulsion = 16686.116783 eV Total energy + Delta-G solvation = -3137.478514 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.78028 -40.96443 -37.96971 -37.72353 -36.20981 -34.77172 -33.81174 -31.46649 -29.78840 -29.26196 -27.14127 -25.00851 -24.00045 -22.73557 -21.43447 -19.95892 -19.18929 -18.23198 -18.07127 -17.38051 -17.06678 -16.84998 -16.10556 -15.66294 -15.54830 -15.37394 -14.98156 -14.69666 -14.51388 -13.97908 -13.82239 -13.44799 -13.13860 -12.96432 -12.88394 -12.68793 -12.32406 -12.29989 -12.11140 -11.94002 -11.19263 -11.18506 -10.73383 -10.12234 -9.82068 -8.87968 -8.51304 -5.99789 -0.39176 0.06997 1.33336 1.44833 1.52443 1.60724 1.67238 1.92178 2.02693 2.20772 2.32474 2.45875 2.87016 2.99105 3.23072 3.50800 3.54877 3.67381 3.79586 3.95317 4.30879 4.45606 4.46944 4.55037 4.80752 4.85151 4.90641 5.07293 5.36915 5.43097 5.67376 5.86023 5.98681 6.27854 6.84197 6.95027 6.99386 7.20996 7.75357 8.51453 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030629 B = 0.005567 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.942380 B = 5028.813017 C = 5618.103842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.262 3.738 3 C 0.221 3.779 4 N -0.432 5.432 5 C -0.345 4.345 6 H 0.093 0.907 7 C 0.011 3.989 8 N -0.882 5.882 9 Si 0.992 3.008 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.490 3.510 14 O -0.610 6.610 15 C -0.137 4.137 16 C -0.090 4.090 17 C -0.076 4.076 18 C 0.203 3.797 19 N -0.521 5.521 20 C 0.020 3.980 21 C -0.088 4.088 22 N -0.366 5.366 23 C 0.115 3.885 24 H 0.129 0.871 25 H 0.122 0.878 26 H 0.280 0.720 27 H 0.129 0.871 28 H 0.168 0.832 29 H 0.215 0.785 30 H 0.222 0.778 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.348 -10.585 -2.994 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.055 4.055 3 C 0.094 3.906 4 N -0.150 5.150 5 C -0.472 4.472 6 H 0.111 0.889 7 C -0.193 4.193 8 N -0.520 5.520 9 Si 0.815 3.185 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.280 3.720 14 O -0.497 6.497 15 C -0.143 4.143 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.040 4.040 19 N -0.242 5.242 20 C -0.129 4.129 21 C -0.218 4.218 22 N -0.038 5.038 23 C -0.010 4.010 24 H 0.147 0.853 25 H 0.139 0.861 26 H 0.091 0.909 27 H 0.147 0.853 28 H 0.186 0.814 29 H 0.232 0.768 30 H 0.239 0.761 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.230 -10.862 -2.965 12.869 hybrid contribution 0.797 1.715 0.558 1.972 sum 7.028 -9.147 -2.408 11.784 Atomic orbital electron populations 1.80928 1.14235 1.13895 1.08880 1.29312 0.95506 0.88639 0.92007 1.19134 0.80859 1.03824 0.86743 1.43728 1.54700 1.05766 1.10770 1.19765 1.39126 0.80746 1.07559 0.88901 1.25953 0.94493 1.03200 0.95627 1.69888 1.22271 1.35837 1.23994 0.84931 0.78143 0.76313 0.79076 1.18323 1.21167 1.19816 1.17857 0.84803 0.84385 0.84962 1.90647 1.54588 1.84560 1.19876 1.19523 0.95635 0.94319 1.04828 1.21162 0.96913 0.96081 0.97307 1.20216 0.97298 0.90607 1.01459 1.21220 0.89319 0.91961 1.01509 1.70716 1.20200 1.07805 1.25461 1.23174 0.89993 1.00839 0.98933 1.23500 0.99661 0.85475 1.13119 1.42966 1.14453 1.08406 1.37940 1.21932 1.00650 0.80791 0.97606 0.85344 0.86070 0.90913 0.85322 0.81437 0.76844 0.76119 0.79242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.72 18.44 20.00 0.37 -22.35 16 2 C 0.26 11.09 10.54 89.44 0.94 12.03 16 3 C 0.22 8.39 4.76 84.57 0.40 8.79 16 4 N -0.43 -19.36 2.58 -649.10 -1.68 -21.03 16 5 C -0.35 -17.09 9.41 84.08 0.79 -16.30 16 6 H 0.09 4.96 7.31 -2.92 -0.02 4.94 16 7 C 0.01 0.51 4.92 84.94 0.42 0.92 16 8 N -0.88 -41.58 8.98 21.67 0.19 -41.39 16 9 Si 0.99 37.77 29.62 68.60 2.03 39.81 16 10 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 11 H -0.29 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 13 C 0.49 21.46 7.13 86.68 0.62 22.08 16 14 O -0.61 -31.23 16.65 -4.11 -0.07 -31.30 16 15 C -0.14 -4.72 4.74 -20.12 -0.10 -4.81 16 16 C -0.09 -2.92 7.69 22.54 0.17 -2.75 16 17 C -0.08 -2.20 10.08 22.38 0.23 -1.97 16 18 C 0.20 6.03 7.80 134.16 1.05 7.08 16 19 N -0.52 -15.08 11.31 -194.16 -2.20 -17.28 16 20 C 0.02 0.43 11.82 83.68 0.99 1.42 16 21 C -0.09 -1.75 11.75 83.14 0.98 -0.78 16 22 N -0.37 -9.74 2.93 -350.08 -1.03 -10.77 16 23 C 0.12 3.29 10.66 83.90 0.89 4.18 16 24 H 0.13 4.92 6.43 -2.39 -0.02 4.90 16 25 H 0.12 3.70 5.88 -2.38 -0.01 3.69 16 26 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 27 H 0.13 4.58 4.89 -2.91 -0.01 4.56 16 28 H 0.17 4.16 8.06 -2.91 -0.02 4.13 16 29 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.19 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -65.48 278.21 6.20 -59.27 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.19 Total: 15.14 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: 7.38 Total: 29.89 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.34 Total: -112.82 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.07 Total: -31.30 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.81 kcal Total: -65.48 6.20 -59.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340668267.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.142 kcal (2) G-P(sol) polarization free energy of solvation -65.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds