Wall clock time and date at job start Mon Mar 30 2020 00:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48498 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47053 * 299.99408 * 3 2 1 6 6 H 1.48499 * 109.47447 * 59.99827 * 3 2 1 7 7 C 1.37871 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47501 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47542 * 179.97438 * 10 9 7 12 12 C 1.34841 * 124.17176 * 89.99885 * 11 10 9 13 13 O 1.21227 * 127.15748 * 0.68099 * 12 11 10 14 14 C 1.51510 * 105.68629 * 180.67438 * 12 11 10 15 15 H 1.08994 * 111.38640 * 117.75260 * 14 12 11 16 16 C 1.53246 * 110.29943 * 241.83830 * 14 12 11 17 17 S 1.81692 * 108.80495 * 167.96883 * 16 14 12 18 18 C 1.81947 * 102.19359 * 302.41880 * 17 16 14 19 19 C 1.53357 * 108.36441 * 57.59850 * 18 17 16 20 20 N 1.46334 * 109.01741 * 304.25163 * 19 18 17 21 21 C 1.33914 * 124.17893 * 270.02846 * 11 10 9 22 22 O 1.21537 * 123.84414 * 1.16939 * 21 11 10 23 23 H 0.97006 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47211 * 60.00042 * 9 7 2 25 25 H 1.08997 * 109.47417 * 300.00385 * 9 7 2 26 26 H 1.09007 * 109.46825 * 59.99841 * 10 9 7 27 27 H 1.08997 * 109.47128 * 300.00597 * 10 9 7 28 28 H 1.08997 * 109.58205 * 287.76498 * 16 14 12 29 29 H 1.08995 * 109.58254 * 48.03221 * 16 14 12 30 30 H 1.09004 * 110.73337 * 297.42454 * 18 17 16 31 31 H 1.09002 * 108.99719 * 176.75237 * 18 17 16 32 32 H 1.09002 * 109.56196 * 184.36037 * 19 18 17 33 33 H 1.09000 * 109.56002 * 64.14007 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5127 -4.9308 0.0032 12 6 1.1327 -5.5875 -1.1115 13 8 1.3354 -5.2580 -2.2604 14 6 0.4000 -6.8229 -0.6294 15 1 -0.6397 -6.8213 -0.9564 16 6 1.1276 -8.0884 -1.0958 17 16 0.4382 -9.5192 -0.2133 18 6 0.7070 -9.0632 1.5274 19 6 0.0058 -7.7248 1.7901 20 7 0.5027 -6.7312 0.8377 21 6 1.1373 -5.5812 1.1120 22 8 1.3476 -5.1761 2.2384 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5562 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8712 -3.6047 -0.8890 28 1 0.9850 -8.2175 -2.1686 29 1 2.1917 -7.9997 -0.8769 30 1 1.7715 -8.9653 1.7407 31 1 0.2748 -9.8330 2.1667 32 1 0.2190 -7.3945 2.8068 33 1 -1.0701 -7.8455 1.6637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349129053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:44 Heat of formation + Delta-G solvation = -38.733667 kcal Electronic energy + Delta-G solvation = -18866.155608 eV Core-core repulsion = 15826.121603 eV Total energy + Delta-G solvation = -3040.034005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.29262 -38.44065 -36.82399 -35.54622 -33.48549 -32.35946 -30.77696 -29.47530 -25.83488 -24.63506 -23.82267 -21.76927 -21.51888 -20.04488 -17.49870 -17.13738 -16.75898 -16.26483 -15.98841 -15.39315 -15.05981 -14.91129 -14.50190 -14.46204 -13.95531 -13.76903 -13.38727 -13.04774 -12.90939 -12.40268 -12.19129 -11.91785 -11.60873 -11.00338 -10.90034 -10.59828 -10.41990 -10.18541 -10.12822 -9.80532 -9.35092 -9.26876 -8.93902 -8.42239 -8.09831 -6.06700 -4.10753 1.22801 1.72970 2.03585 2.21818 3.03718 3.24902 3.29854 3.36986 3.41231 4.05943 4.17387 4.31638 4.42413 4.57786 4.63898 4.84117 5.06159 5.19749 5.29173 5.30197 5.43891 5.58543 5.94063 6.01620 6.23527 6.41380 6.60010 7.27778 7.52483 7.58300 7.66091 7.89537 8.21239 8.31517 8.94451 9.53670 11.05055 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.004545 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.251657 B = 6159.152299 C = 6514.347969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.567 5.567 12 C 0.527 3.473 13 O -0.462 6.462 14 C 0.092 3.908 15 H 0.138 0.862 16 C -0.084 4.084 17 S -0.234 6.234 18 C -0.107 4.107 19 C 0.150 3.850 20 N -0.635 5.635 21 C 0.704 3.296 22 O -0.532 6.532 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -19.963 0.943 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.001 3.999 11 N -0.311 5.311 12 C 0.311 3.689 13 O -0.331 6.331 14 C -0.017 4.017 15 H 0.155 0.845 16 C -0.233 4.233 17 S -0.006 6.006 18 C -0.256 4.256 19 C 0.026 3.974 20 N -0.375 5.375 21 C 0.406 3.594 22 O -0.405 6.405 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.449 -20.399 0.623 20.413 hybrid contribution 0.864 2.005 0.456 2.230 sum 0.415 -18.394 1.079 18.431 Atomic orbital electron populations 1.69983 1.06166 1.26765 1.50113 1.24996 0.94877 0.99429 0.94902 0.86440 0.80060 0.83315 0.77625 1.19578 1.20910 1.20901 1.21020 0.93124 0.90247 1.51688 0.92160 1.19419 0.94269 0.90797 0.98107 1.22246 0.95622 0.78983 1.03057 1.46815 1.52912 1.24529 1.06839 1.20543 0.78572 0.84402 0.85364 1.90800 1.53990 1.70490 1.17834 1.22414 1.02901 0.94491 0.81931 0.84493 1.23603 1.02519 0.92870 1.04350 1.87001 1.81146 1.28669 1.03804 1.24050 1.05225 1.00803 0.95546 1.21497 0.98363 0.84518 0.92979 1.47677 1.61813 1.22046 1.06002 1.15814 0.78368 0.80315 0.84869 1.90978 1.59338 1.69712 1.20480 0.92867 0.96032 0.95753 0.89676 0.89750 0.85273 0.88756 0.88870 0.85981 0.87353 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.31 5.30 -27.89 -0.15 0.17 16 10 C 0.12 2.55 5.64 -4.04 -0.02 2.52 16 11 N -0.57 -10.48 2.61 -120.80 -0.32 -10.80 16 12 C 0.53 8.64 7.61 -10.56 -0.08 8.56 16 13 O -0.46 -8.69 17.76 5.60 0.10 -8.59 16 14 C 0.09 1.10 3.80 -68.09 -0.26 0.84 16 15 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 16 C -0.08 -0.80 5.99 37.28 0.22 -0.58 16 17 S -0.23 -2.06 22.23 -107.50 -2.39 -4.45 16 18 C -0.11 -0.79 6.69 37.34 0.25 -0.54 16 19 C 0.15 1.36 6.71 -3.95 -0.03 1.34 16 20 N -0.63 -8.15 2.91 -172.25 -0.50 -8.65 16 21 C 0.70 12.35 8.33 -88.22 -0.73 11.61 16 22 O -0.53 -11.07 17.01 5.33 0.09 -10.98 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.79 7.88 -51.93 -0.41 1.38 16 27 H 0.08 1.72 8.00 -51.93 -0.42 1.31 16 28 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.11 1.01 7.74 -51.93 -0.40 0.61 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -33.70 296.07 -8.20 -41.89 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.15 Total: -3.71 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -1.21 Total: 10.44 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.08 Total: -45.74 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.19 Total: -19.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.39 Total: -4.45 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.70 -8.20 -41.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.160 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds