Wall clock time and date at job start Mon Mar 30 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48498 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47053 * 299.99408 * 3 2 1 6 6 H 1.48499 * 109.47447 * 59.99827 * 3 2 1 7 7 C 1.37871 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47501 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47542 * 179.97438 * 10 9 7 12 12 C 1.34841 * 124.17176 * 89.99885 * 11 10 9 13 13 O 1.21227 * 127.15748 * 0.68099 * 12 11 10 14 14 C 1.51510 * 105.68629 * 180.67438 * 12 11 10 15 15 H 1.08994 * 111.38640 * 117.75260 * 14 12 11 16 16 C 1.53246 * 110.29943 * 241.83830 * 14 12 11 17 17 S 1.81692 * 108.80495 * 167.96883 * 16 14 12 18 18 C 1.81947 * 102.19359 * 302.41880 * 17 16 14 19 19 C 1.53357 * 108.36441 * 57.59850 * 18 17 16 20 20 N 1.46334 * 109.01741 * 304.25163 * 19 18 17 21 21 C 1.33914 * 124.17893 * 270.02846 * 11 10 9 22 22 O 1.21537 * 123.84414 * 1.16939 * 21 11 10 23 23 H 0.97006 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47211 * 60.00042 * 9 7 2 25 25 H 1.08997 * 109.47417 * 300.00385 * 9 7 2 26 26 H 1.09007 * 109.46825 * 59.99841 * 10 9 7 27 27 H 1.08997 * 109.47128 * 300.00597 * 10 9 7 28 28 H 1.08997 * 109.58205 * 287.76498 * 16 14 12 29 29 H 1.08995 * 109.58254 * 48.03221 * 16 14 12 30 30 H 1.09004 * 110.73337 * 297.42454 * 18 17 16 31 31 H 1.09002 * 108.99719 * 176.75237 * 18 17 16 32 32 H 1.09002 * 109.56196 * 184.36037 * 19 18 17 33 33 H 1.09000 * 109.56002 * 64.14007 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5127 -4.9308 0.0032 12 6 1.1327 -5.5875 -1.1115 13 8 1.3354 -5.2580 -2.2604 14 6 0.4000 -6.8229 -0.6294 15 1 -0.6397 -6.8213 -0.9564 16 6 1.1276 -8.0884 -1.0958 17 16 0.4382 -9.5192 -0.2133 18 6 0.7070 -9.0632 1.5274 19 6 0.0058 -7.7248 1.7901 20 7 0.5027 -6.7312 0.8377 21 6 1.1373 -5.5812 1.1120 22 8 1.3476 -5.1761 2.2384 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5562 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8712 -3.6047 -0.8890 28 1 0.9850 -8.2175 -2.1686 29 1 2.1917 -7.9997 -0.8769 30 1 1.7715 -8.9653 1.7407 31 1 0.2748 -9.8330 2.1667 32 1 0.2190 -7.3945 2.8068 33 1 -1.0701 -7.8455 1.6637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349129053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:43 Heat of formation + Delta-G solvation = -60.936559 kcal Electronic energy + Delta-G solvation = -18867.118398 eV Core-core repulsion = 15826.121603 eV Total energy + Delta-G solvation = -3040.996795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.60283 -39.83414 -38.05202 -37.07232 -35.37044 -33.57814 -32.17063 -30.84611 -27.50961 -25.93352 -24.98607 -23.43794 -22.75442 -21.43725 -19.02534 -18.37723 -18.28379 -17.65878 -17.20322 -16.59680 -16.42807 -16.23778 -15.98268 -15.60395 -15.07252 -14.94610 -14.87093 -14.42783 -14.29389 -13.77539 -13.59995 -13.00775 -12.92144 -12.81035 -12.60906 -12.15916 -12.10528 -11.96991 -11.48838 -11.38830 -10.88034 -10.76330 -10.64797 -10.30444 -8.80099 -8.27721 -6.40979 0.41045 0.52101 1.03727 1.28992 1.39747 1.40524 1.54236 1.80053 1.93232 2.38270 2.88818 3.06897 3.23169 3.48145 3.78715 3.91133 4.05353 4.19744 4.26787 4.35757 4.41629 4.52169 4.59636 4.66568 4.77967 4.85310 5.25856 5.32145 5.40061 5.68892 6.01397 6.04384 6.24269 6.72739 6.90911 7.29266 8.85431 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.004545 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.251657 B = 6159.152299 C = 6514.347969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.024 3.976 10 C 0.135 3.865 11 N -0.580 5.580 12 C 0.522 3.478 13 O -0.490 6.490 14 C 0.105 3.895 15 H 0.163 0.837 16 C -0.081 4.081 17 S -0.226 6.226 18 C -0.099 4.099 19 C 0.141 3.859 20 N -0.620 5.620 21 C 0.698 3.302 22 O -0.574 6.574 23 H 0.266 0.734 24 H -0.009 1.009 25 H -0.011 1.011 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -21.435 0.929 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.324 5.324 12 C 0.309 3.691 13 O -0.361 6.361 14 C -0.004 4.004 15 H 0.180 0.820 16 C -0.231 4.231 17 S 0.003 5.997 18 C -0.248 4.248 19 C 0.020 3.980 20 N -0.359 5.359 21 C 0.401 3.599 22 O -0.450 6.450 23 H 0.074 0.926 24 H 0.010 0.990 25 H 0.007 0.993 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.162 0.838 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.124 0.876 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.160 -21.953 0.598 21.961 hybrid contribution 0.702 2.379 0.471 2.525 sum 0.542 -19.573 1.069 19.610 Atomic orbital electron populations 1.70122 1.08081 1.28052 1.50983 1.26039 0.95805 1.03729 0.94133 0.85256 0.79152 0.77959 0.77819 1.18069 1.20194 1.20319 1.21489 0.93916 0.91278 1.51626 0.91051 1.19182 0.94415 0.92970 0.94818 1.21751 0.94390 0.78938 1.03437 1.46792 1.53280 1.23952 1.08351 1.21279 0.78024 0.85360 0.84461 1.90777 1.55068 1.71550 1.18746 1.22546 1.03725 0.93108 0.80974 0.81994 1.23577 1.02059 0.91869 1.05547 1.87078 1.80778 1.27457 1.04402 1.24084 1.05172 1.00302 0.95215 1.21898 0.99816 0.84246 0.92057 1.47864 1.60082 1.20872 1.07111 1.15964 0.78645 0.81372 0.83923 1.90941 1.61226 1.71026 1.21763 0.92556 0.99033 0.99297 0.89593 0.88943 0.83774 0.89044 0.89095 0.82887 0.87585 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.33 5.30 29.85 0.16 1.49 16 10 C 0.14 5.95 5.64 86.38 0.49 6.44 16 11 N -0.58 -21.91 2.61 -773.26 -2.02 -23.92 16 12 C 0.52 17.10 7.61 87.91 0.67 17.77 16 13 O -0.49 -18.61 17.76 -2.87 -0.05 -18.66 16 14 C 0.11 2.33 3.80 44.42 0.17 2.50 16 15 H 0.16 2.90 8.14 -2.39 -0.02 2.88 16 16 C -0.08 -1.35 5.99 72.06 0.43 -0.92 16 17 S -0.23 -3.23 22.23 -56.49 -1.26 -4.49 16 18 C -0.10 -1.13 6.69 72.10 0.48 -0.65 16 19 C 0.14 2.23 6.71 86.53 0.58 2.81 16 20 N -0.62 -15.08 2.91 -817.50 -2.38 -17.46 16 21 C 0.70 24.73 8.33 179.51 1.49 26.22 16 22 O -0.57 -24.46 17.01 -3.83 -0.07 -24.53 16 23 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 24 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.09 3.73 7.88 -2.38 -0.02 3.71 16 27 H 0.09 3.87 8.00 -2.39 -0.02 3.85 16 28 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.81 7.74 -2.39 -0.02 1.79 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.36 296.07 2.83 -72.53 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 1.12 Total: 2.64 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 5.17 Total: 24.86 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -4.11 Total: -99.08 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.12 Total: -43.19 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.26 Total: -4.49 kcal Total: -75.36 2.83 -72.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.593 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds