Wall clock time and date at job start Mon Mar 30 2020 00:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.34834 * 124.17753 * 89.99673 * 11 10 9 13 13 O 1.21236 * 127.15218 * 359.22879 * 12 11 10 14 14 C 1.51512 * 105.69889 * 179.25464 * 12 11 10 15 15 H 1.08997 * 111.38140 * 242.14458 * 14 12 11 16 16 C 1.53237 * 109.56484 * 118.58096 * 14 12 11 17 17 S 1.81684 * 108.81593 * 192.44423 * 16 14 12 18 18 C 1.81634 * 102.65900 * 56.64744 * 17 16 14 19 19 C 1.53372 * 109.00644 * 303.64005 * 18 17 16 20 20 N 1.46450 * 109.66218 * 54.33983 * 19 18 17 21 21 C 1.33918 * 124.17532 * 269.70143 * 11 10 9 22 22 O 1.21532 * 123.84504 * 359.08762 * 21 11 10 23 23 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 27 27 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 28 28 H 1.09000 * 109.57691 * 312.24685 * 16 14 12 29 29 H 1.08998 * 109.58026 * 72.64356 * 16 14 12 30 30 H 1.09005 * 109.55098 * 63.49536 * 18 17 16 31 31 H 1.08993 * 109.55030 * 183.69282 * 18 17 16 32 32 H 1.09002 * 109.55646 * 174.59555 * 19 18 17 33 33 H 1.08995 * 109.55758 * 294.81322 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 1.1345 -5.5865 -1.1177 13 8 1.3177 -5.2438 -2.2661 14 6 0.4323 -6.8405 -0.6381 15 1 0.9536 -7.7389 -0.9684 16 6 -1.0216 -6.8314 -1.1219 17 16 -1.9394 -8.1309 -0.2443 18 6 -1.6801 -7.6930 1.4993 19 6 -0.1736 -7.6255 1.7787 20 7 0.4631 -6.7099 0.8294 21 6 1.1412 -5.5853 1.1057 22 8 1.3871 -5.2026 2.2327 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6246 -2.5563 -0.8919 26 1 2.8725 -3.6039 -0.8910 27 1 2.8713 -3.6047 0.8890 28 1 -1.4707 -5.8609 -0.9108 29 1 -1.0510 -7.0242 -2.1943 30 1 -2.1326 -6.7224 1.7028 31 1 -2.1371 -8.4495 2.1372 32 1 -0.0066 -7.2704 2.7956 33 1 0.2640 -8.6169 1.6619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349129054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:47 Heat of formation + Delta-G solvation = -39.441974 kcal Electronic energy + Delta-G solvation = -18949.825010 eV Core-core repulsion = 15909.760291 eV Total energy + Delta-G solvation = -3040.064720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.28625 -38.43867 -36.79481 -35.54335 -33.48233 -32.34054 -30.76409 -29.46799 -25.81393 -24.61452 -23.82285 -21.84100 -21.46215 -20.03147 -17.32768 -17.23415 -16.81397 -16.16931 -16.00317 -15.36907 -15.08487 -14.88369 -14.59056 -14.27382 -13.90375 -13.82580 -13.36117 -13.04135 -12.90132 -12.39099 -12.14830 -11.91276 -11.58177 -11.00975 -10.91002 -10.59335 -10.39186 -10.17657 -10.13353 -9.78543 -9.34874 -9.28163 -8.93893 -8.43395 -8.02676 -6.07950 -4.11919 1.28034 1.73089 2.11034 2.23092 3.06072 3.23486 3.29201 3.36406 3.40745 4.04975 4.23058 4.33783 4.41855 4.63117 4.68767 4.87971 5.09115 5.23577 5.29060 5.39496 5.46757 5.59600 5.94127 6.01903 6.23542 6.41489 6.59230 7.27458 7.51161 7.57932 7.64472 7.88316 8.20390 8.30915 8.93281 9.52617 11.03836 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.004879 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.420265 B = 5737.715484 C = 5827.333026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.119 3.881 11 N -0.567 5.567 12 C 0.526 3.474 13 O -0.462 6.462 14 C 0.093 3.907 15 H 0.137 0.863 16 C -0.087 4.087 17 S -0.234 6.234 18 C -0.110 4.110 19 C 0.151 3.849 20 N -0.634 5.634 21 C 0.704 3.296 22 O -0.533 6.533 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -18.589 0.881 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.311 5.311 12 C 0.310 3.690 13 O -0.331 6.331 14 C -0.016 4.016 15 H 0.154 0.846 16 C -0.236 4.236 17 S -0.006 6.006 18 C -0.259 4.259 19 C 0.028 3.972 20 N -0.375 5.375 21 C 0.407 3.593 22 O -0.405 6.405 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.112 0.888 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.945 -18.930 0.556 19.166 hybrid contribution 0.901 1.994 0.465 2.237 sum -2.044 -16.936 1.021 17.089 Atomic orbital electron populations 1.69984 1.06177 1.26772 1.50159 1.24999 0.94883 0.99451 0.94890 0.86434 0.80072 0.83279 0.77627 1.19555 1.20901 1.20908 1.21024 0.93147 0.90225 1.51644 0.92128 1.19411 0.94263 0.90839 0.98000 1.22251 0.95639 0.78936 1.03140 1.46817 1.53088 1.24350 1.06854 1.20594 0.78281 0.84788 0.85368 1.90804 1.53634 1.70760 1.17908 1.22373 0.97295 0.99994 0.81978 0.84590 1.23645 0.93991 1.01781 1.04206 1.86840 1.69977 1.40053 1.03754 1.24001 0.99511 1.06807 0.95625 1.21487 0.89840 0.92884 0.92963 1.47731 1.57545 1.26249 1.05981 1.15818 0.78825 0.79826 0.84863 1.90973 1.59501 1.69660 1.20408 0.92871 0.95896 0.96060 0.89748 0.89584 0.88354 0.85153 0.88793 0.85816 0.87366 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 10 C 0.12 2.53 5.65 -4.05 -0.02 2.51 16 11 N -0.57 -10.49 2.61 -120.80 -0.32 -10.80 16 12 C 0.53 8.61 7.55 -10.56 -0.08 8.53 16 13 O -0.46 -8.69 17.76 5.60 0.10 -8.59 16 14 C 0.09 1.11 3.81 -68.09 -0.26 0.85 16 15 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.09 -0.95 5.99 37.28 0.22 -0.73 16 17 S -0.23 -2.28 22.22 -107.50 -2.39 -4.67 16 18 C -0.11 -0.92 6.67 37.35 0.25 -0.67 16 19 C 0.15 1.40 6.72 -3.88 -0.03 1.37 16 20 N -0.63 -8.17 2.96 -172.15 -0.51 -8.68 16 21 C 0.70 12.36 8.33 -88.20 -0.73 11.63 16 22 O -0.53 -11.06 17.00 5.34 0.09 -10.97 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.73 8.01 -51.93 -0.42 1.31 16 27 H 0.09 1.81 7.85 -51.93 -0.41 1.40 16 28 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 29 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.11 1.03 7.75 -51.93 -0.40 0.63 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -33.59 296.04 -8.20 -41.80 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -4.15 Total: -3.16 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.21 Total: 10.22 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.09 Total: -45.74 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.19 Total: -19.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.39 Total: -4.67 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.59 -8.20 -41.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.353 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds