Wall clock time and date at job start Mon Mar 30 2020 00:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.34834 * 124.17753 * 89.99673 * 11 10 9 13 13 O 1.21236 * 127.15218 * 359.22879 * 12 11 10 14 14 C 1.51512 * 105.69889 * 179.25464 * 12 11 10 15 15 H 1.08997 * 111.38140 * 242.14458 * 14 12 11 16 16 C 1.53237 * 109.56484 * 118.58096 * 14 12 11 17 17 S 1.81684 * 108.81593 * 192.44423 * 16 14 12 18 18 C 1.81634 * 102.65900 * 56.64744 * 17 16 14 19 19 C 1.53372 * 109.00644 * 303.64005 * 18 17 16 20 20 N 1.46450 * 109.66218 * 54.33983 * 19 18 17 21 21 C 1.33918 * 124.17532 * 269.70143 * 11 10 9 22 22 O 1.21532 * 123.84504 * 359.08762 * 21 11 10 23 23 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 27 27 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 28 28 H 1.09000 * 109.57691 * 312.24685 * 16 14 12 29 29 H 1.08998 * 109.58026 * 72.64356 * 16 14 12 30 30 H 1.09005 * 109.55098 * 63.49536 * 18 17 16 31 31 H 1.08993 * 109.55030 * 183.69282 * 18 17 16 32 32 H 1.09002 * 109.55646 * 174.59555 * 19 18 17 33 33 H 1.08995 * 109.55758 * 294.81322 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 1.1345 -5.5865 -1.1177 13 8 1.3177 -5.2438 -2.2661 14 6 0.4323 -6.8405 -0.6381 15 1 0.9536 -7.7389 -0.9684 16 6 -1.0216 -6.8314 -1.1219 17 16 -1.9394 -8.1309 -0.2443 18 6 -1.6801 -7.6930 1.4993 19 6 -0.1736 -7.6255 1.7787 20 7 0.4631 -6.7099 0.8294 21 6 1.1412 -5.5853 1.1057 22 8 1.3871 -5.2026 2.2327 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6246 -2.5563 -0.8919 26 1 2.8725 -3.6039 -0.8910 27 1 2.8713 -3.6047 0.8890 28 1 -1.4707 -5.8609 -0.9108 29 1 -1.0510 -7.0242 -2.1943 30 1 -2.1326 -6.7224 1.7028 31 1 -2.1371 -8.4495 2.1372 32 1 -0.0066 -7.2704 2.7956 33 1 0.2640 -8.6169 1.6619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349129054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:46 Heat of formation + Delta-G solvation = -61.700749 kcal Electronic energy + Delta-G solvation = -18950.790223 eV Core-core repulsion = 15909.760291 eV Total energy + Delta-G solvation = -3041.029932 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.59976 -39.83325 -38.03538 -37.07264 -35.37815 -33.58372 -32.20334 -30.86162 -27.51733 -25.92668 -25.01524 -23.52035 -22.71062 -21.43421 -18.95757 -18.42620 -18.30900 -17.68677 -17.15806 -16.57206 -16.42583 -16.36808 -15.97357 -15.50768 -15.07691 -14.98323 -14.94217 -14.39544 -14.34242 -13.81075 -13.60542 -13.00843 -12.92395 -12.79163 -12.66994 -12.16536 -12.12566 -11.97094 -11.49742 -11.39451 -10.90407 -10.75617 -10.65975 -10.30697 -8.81469 -8.28973 -6.42223 0.38187 0.50077 1.02913 1.29000 1.39127 1.39874 1.53738 1.85735 1.87863 2.37500 2.86910 3.05735 3.23792 3.46604 3.76639 3.91325 4.03698 4.18623 4.25820 4.35185 4.41514 4.50548 4.58434 4.65851 4.76823 4.84992 5.25169 5.30640 5.38732 5.67649 6.01235 6.03327 6.24342 6.71576 6.90449 7.28158 8.84197 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.004879 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.420265 B = 5737.715484 C = 5827.333026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.025 3.975 10 C 0.134 3.866 11 N -0.580 5.580 12 C 0.520 3.480 13 O -0.491 6.491 14 C 0.110 3.890 15 H 0.180 0.820 16 C -0.090 4.090 17 S -0.217 6.217 18 C -0.107 4.107 19 C 0.144 3.856 20 N -0.620 5.620 21 C 0.699 3.301 22 O -0.573 6.573 23 H 0.266 0.734 24 H -0.013 1.013 25 H -0.010 1.010 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -20.273 0.871 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.090 0.910 9 C -0.013 4.013 10 C 0.014 3.986 11 N -0.324 5.324 12 C 0.307 3.693 13 O -0.362 6.362 14 C 0.001 3.999 15 H 0.197 0.803 16 C -0.239 4.239 17 S 0.012 5.988 18 C -0.256 4.256 19 C 0.023 3.977 20 N -0.359 5.359 21 C 0.401 3.599 22 O -0.449 6.449 23 H 0.074 0.926 24 H 0.005 0.995 25 H 0.009 0.991 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.165 0.835 30 H 0.095 0.905 31 H 0.176 0.824 32 H 0.124 0.876 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.590 -20.685 0.536 20.853 hybrid contribution 0.692 2.446 0.479 2.587 sum -1.898 -18.239 1.014 18.365 Atomic orbital electron populations 1.70125 1.08106 1.28052 1.51037 1.26050 0.95809 1.03773 0.94123 0.85248 0.79175 0.77905 0.77813 1.18014 1.20192 1.20331 1.21493 0.93943 0.91246 1.51567 0.90996 1.19169 0.94387 0.93027 0.94671 1.21759 0.94403 0.78911 1.03533 1.46797 1.53463 1.23779 1.08387 1.21354 0.77655 0.85850 0.84456 1.90781 1.54705 1.71839 1.18839 1.22546 0.97719 0.98670 0.80936 0.80307 1.23618 0.93128 1.01480 1.05719 1.86855 1.69560 1.38313 1.04114 1.24079 0.98878 1.07121 0.95501 1.21906 0.90312 0.93429 0.92014 1.47927 1.56086 1.24812 1.07123 1.15974 0.79204 0.80787 0.83923 1.90936 1.61338 1.70977 1.21678 0.92570 0.99480 0.99124 0.88911 0.89490 0.90884 0.83507 0.90497 0.82387 0.87629 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.98 44.74 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 8 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.03 1.40 5.30 29.85 0.16 1.56 16 10 C 0.13 5.92 5.65 86.38 0.49 6.41 16 11 N -0.58 -21.95 2.61 -773.25 -2.02 -23.96 16 12 C 0.52 17.01 7.55 87.91 0.66 17.67 16 13 O -0.49 -18.64 17.76 -2.89 -0.05 -18.69 16 14 C 0.11 2.39 3.81 44.42 0.17 2.56 16 15 H 0.18 2.53 8.14 -2.39 -0.02 2.51 16 16 C -0.09 -1.83 5.99 72.06 0.43 -1.39 16 17 S -0.22 -3.59 22.22 -56.49 -1.26 -4.85 16 18 C -0.11 -1.50 6.67 72.11 0.48 -1.02 16 19 C 0.14 2.27 6.72 86.51 0.58 2.86 16 20 N -0.62 -15.05 2.96 -817.18 -2.42 -17.47 16 21 C 0.70 24.72 8.33 179.50 1.50 26.22 16 22 O -0.57 -24.40 17.00 -3.82 -0.06 -24.47 16 23 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 24 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.09 3.89 8.01 -2.39 -0.02 3.87 16 27 H 0.09 3.78 7.85 -2.38 -0.02 3.76 16 28 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 29 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.81 7.75 -2.39 -0.02 1.79 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.87 296.04 2.78 -73.09 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.12 Total: 3.32 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.16 Total: 24.07 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -4.15 Total: -99.25 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.12 Total: -43.16 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.26 Total: -4.85 kcal Total: -75.87 2.78 -73.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.389 kcal (2) G-P(sol) polarization free energy of solvation -75.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds