Wall clock time and date at job start Mon Mar 30 2020 02:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47105 * 252.14483 * 3 2 1 5 5 C 1.36962 * 119.99976 * 91.05068 * 4 3 2 6 6 H 1.08005 * 119.99740 * 158.12046 * 5 4 3 7 7 C 1.38964 * 120.00068 * 338.12397 * 5 4 3 8 8 N 1.31424 * 120.00113 * 335.72393 * 7 5 4 9 9 Si 1.86803 * 120.00293 * 155.72109 * 7 5 4 10 10 H 1.48507 * 109.46877 * 59.99873 * 9 7 5 11 11 H 1.48500 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46974 * 300.00529 * 9 7 5 13 13 C 1.34777 * 120.00095 * 271.04585 * 4 3 2 14 14 O 1.21701 * 120.00018 * 5.48007 * 13 4 3 15 15 C 1.46840 * 120.00247 * 185.47175 * 13 4 3 16 16 C 1.36445 * 126.83166 * 45.06854 * 15 13 4 17 17 N 1.35596 * 109.73020 * 179.89119 * 16 15 13 18 18 H 0.96995 * 124.71518 * 180.15385 * 17 16 15 19 19 C 1.37705 * 110.56217 * 0.38972 * 17 16 15 20 20 N 1.32672 * 132.93133 * 179.76738 * 19 17 16 21 21 C 1.31611 * 121.69321 * 180.02562 * 20 19 17 22 22 C 1.38583 * 121.54177 * 0.02562 * 21 20 19 23 23 C 1.38345 * 119.32198 * 0.02562 * 22 21 20 24 24 C 1.39346 * 118.05518 * 359.96192 * 23 22 21 25 25 H 1.09004 * 109.47634 * 12.14728 * 3 2 1 26 26 H 1.08998 * 109.46800 * 132.14563 * 3 2 1 27 27 H 0.96998 * 119.99981 * 180.02562 * 8 7 5 28 28 H 1.08004 * 125.13306 * 0.03492 * 16 15 13 29 29 H 1.08004 * 119.22964 * 179.97438 * 21 20 19 30 30 H 1.07997 * 120.33759 * 179.97438 * 22 21 20 31 31 H 1.08000 * 120.97188 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0961 0.4244 1.3147 5 6 3.3453 -0.5086 2.2859 6 1 4.0149 -0.2745 3.1004 7 6 2.7366 -1.7563 2.2234 8 7 1.6079 -1.9046 1.5668 9 14 3.5228 -3.2227 3.0726 10 1 3.6344 -2.9505 4.5282 11 1 2.6825 -4.4281 2.8580 12 1 4.8762 -3.4550 2.5073 13 6 3.3000 1.7322 1.5684 14 8 2.9853 2.5687 0.7423 15 6 3.9019 2.1481 2.8416 16 6 4.9885 1.5932 3.4525 17 7 5.2468 2.2489 4.6109 18 1 5.9734 2.0347 5.2167 19 6 4.3310 3.2578 4.8103 20 7 4.1677 4.1520 5.7766 21 6 3.1933 5.0361 5.7431 22 6 2.2873 5.0770 4.6952 23 6 2.4078 4.1679 3.6595 24 6 3.4476 3.2421 3.7178 25 1 2.9718 -1.0038 -0.2162 26 1 2.9709 0.6904 -0.7620 27 1 1.1828 -2.7755 1.5235 28 1 5.5583 0.7594 3.0698 29 1 3.0971 5.7458 6.5515 30 1 1.4948 5.8107 4.6877 31 1 1.7168 4.1760 2.8295 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355706886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:03 Heat of formation + Delta-G solvation = 83.191358 kcal Electronic energy + Delta-G solvation = -19838.464350 eV Core-core repulsion = 16700.566211 eV Total energy + Delta-G solvation = -3137.898139 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26681 -38.66710 -37.42608 -35.50352 -34.29052 -32.56619 -31.74250 -30.00908 -29.29620 -27.21611 -25.04163 -23.44878 -22.25815 -21.87606 -19.04745 -18.34659 -17.55639 -16.63902 -16.15027 -15.70371 -15.55744 -14.75910 -14.57955 -14.49586 -14.19792 -13.31215 -12.99687 -12.93989 -12.64095 -12.53981 -12.06300 -12.02243 -11.66481 -11.38359 -11.22089 -11.19851 -10.61869 -10.56546 -10.22755 -9.98659 -9.43184 -9.26401 -8.76546 -8.21446 -8.15694 -7.54250 -6.59538 -4.13904 1.28553 1.63000 2.65668 3.01854 3.03785 3.10985 3.13262 3.61455 3.97882 4.07013 4.25998 4.30431 4.70968 4.82024 4.88270 5.10298 5.20439 5.35045 5.46732 5.52290 5.69656 5.90816 6.11777 6.17047 6.40195 6.45186 6.55999 6.73888 6.83896 7.21155 7.26215 7.45498 7.52219 8.10781 8.24156 8.86437 9.04414 9.22110 9.62966 10.43948 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.007108 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.237503 B = 3938.267899 C = 4798.902942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.256 3.744 3 C 0.235 3.765 4 N -0.434 5.434 5 C -0.353 4.353 6 H 0.109 0.891 7 C 0.042 3.958 8 N -0.854 5.854 9 Si 0.918 3.082 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.535 3.465 14 O -0.592 6.592 15 C -0.162 4.162 16 C 0.100 3.900 17 N -0.574 5.574 18 H 0.418 0.582 19 C 0.275 3.725 20 N -0.502 5.502 21 C 0.126 3.874 22 C -0.206 4.206 23 C -0.018 4.018 24 C -0.110 4.110 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.276 0.724 28 H 0.192 0.808 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.123 4.890 4.895 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.062 4.062 3 C 0.108 3.892 4 N -0.153 5.153 5 C -0.480 4.480 6 H 0.127 0.873 7 C -0.165 4.165 8 N -0.489 5.489 9 Si 0.744 3.256 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.325 3.675 14 O -0.477 6.477 15 C -0.173 4.173 16 C -0.030 4.030 17 N -0.179 5.179 18 H 0.255 0.745 19 C 0.042 3.958 20 N -0.216 5.216 21 C -0.039 4.039 22 C -0.228 4.228 23 C -0.045 4.045 24 C -0.118 4.118 25 H 0.128 0.872 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.173 0.827 30 H 0.151 0.849 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.852 5.000 5.151 9.924 hybrid contribution 0.348 -1.192 0.293 1.276 sum 7.200 3.808 5.444 9.797 Atomic orbital electron populations 1.80803 1.13712 1.11856 1.09564 1.28930 0.95148 0.90440 0.91729 1.18424 0.82136 1.01942 0.86695 1.43464 1.56514 1.04680 1.10598 1.19746 1.28351 0.92987 1.06873 0.87339 1.25312 0.93946 0.99791 0.97455 1.69826 1.12752 1.25191 1.41146 0.86124 0.79342 0.80444 0.79643 1.19852 1.20895 1.19461 1.17165 0.82604 0.82221 0.85526 1.90683 1.56948 1.51609 1.48493 1.19901 0.99871 0.99217 0.98265 1.22247 0.98640 0.96768 0.85299 1.41253 1.27562 1.27856 1.21257 0.74466 1.18317 0.91980 0.92439 0.93021 1.66423 1.23441 1.04981 1.26711 1.22290 0.89599 0.94733 0.97327 1.21821 1.02520 1.02116 0.96346 1.21040 0.94871 0.91131 0.97420 1.19525 0.97872 0.98447 0.95957 0.87209 0.88890 0.91289 0.79162 0.82673 0.84856 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.43 18.54 42.15 0.78 -11.65 16 2 C 0.26 6.19 12.93 -20.76 -0.27 5.92 16 3 C 0.23 4.96 5.13 -6.83 -0.04 4.93 16 4 N -0.43 -9.75 2.58 -119.36 -0.31 -10.06 16 5 C -0.35 -7.86 8.85 -14.99 -0.13 -8.00 16 6 H 0.11 2.22 4.59 -52.48 -0.24 1.98 16 7 C 0.04 0.96 4.78 -17.46 -0.08 0.88 16 8 N -0.85 -21.10 9.55 55.50 0.53 -20.58 16 9 Si 0.92 17.68 29.62 -169.99 -5.03 12.65 16 10 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 13 C 0.54 12.19 7.51 -12.78 -0.10 12.10 16 14 O -0.59 -14.80 16.77 5.19 0.09 -14.71 16 15 C -0.16 -3.25 5.46 -103.36 -0.56 -3.81 16 16 C 0.10 1.59 9.64 -16.53 -0.16 1.43 16 17 N -0.57 -8.30 5.97 -11.94 -0.07 -8.37 16 18 H 0.42 4.48 8.96 -40.82 -0.37 4.11 16 19 C 0.27 4.76 8.41 -155.52 -1.31 3.45 16 20 N -0.50 -8.16 10.39 -12.29 -0.13 -8.29 16 21 C 0.13 1.74 11.14 -17.52 -0.20 1.55 16 22 C -0.21 -2.93 10.11 -39.41 -0.40 -3.33 16 23 C -0.02 -0.32 10.21 -39.13 -0.40 -0.72 16 24 C -0.11 -2.14 6.38 -104.93 -0.67 -2.81 16 25 H 0.11 2.17 7.15 -51.93 -0.37 1.80 16 26 H 0.09 1.76 7.54 -51.93 -0.39 1.37 16 27 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.19 2.49 7.23 -52.48 -0.38 2.11 16 29 H 0.16 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 283.23 15.07 4.27 4.27 Total: -1.00 -31.65 283.23 -6.34 -37.99 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -2.15 Total: 7.18 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: -4.31 Total: 11.57 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.80 Total: -58.94 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.09 Total: -14.71 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.65 -6.34 -37.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355706886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.179 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds