Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47105 * 252.14483 * 3 2 1 5 5 C 1.36962 * 119.99976 * 91.05068 * 4 3 2 6 6 H 1.08005 * 119.99740 * 158.12046 * 5 4 3 7 7 C 1.38964 * 120.00068 * 338.12397 * 5 4 3 8 8 N 1.31424 * 120.00113 * 335.72393 * 7 5 4 9 9 Si 1.86803 * 120.00293 * 155.72109 * 7 5 4 10 10 H 1.48507 * 109.46877 * 59.99873 * 9 7 5 11 11 H 1.48500 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46974 * 300.00529 * 9 7 5 13 13 C 1.34777 * 120.00095 * 271.04585 * 4 3 2 14 14 O 1.21701 * 120.00018 * 5.48007 * 13 4 3 15 15 C 1.46840 * 120.00247 * 185.47175 * 13 4 3 16 16 C 1.36445 * 126.83166 * 45.06854 * 15 13 4 17 17 N 1.35596 * 109.73020 * 179.89119 * 16 15 13 18 18 H 0.96995 * 124.71518 * 180.15385 * 17 16 15 19 19 C 1.37705 * 110.56217 * 0.38972 * 17 16 15 20 20 N 1.32672 * 132.93133 * 179.76738 * 19 17 16 21 21 C 1.31611 * 121.69321 * 180.02562 * 20 19 17 22 22 C 1.38583 * 121.54177 * 0.02562 * 21 20 19 23 23 C 1.38345 * 119.32198 * 0.02562 * 22 21 20 24 24 C 1.39346 * 118.05518 * 359.96192 * 23 22 21 25 25 H 1.09004 * 109.47634 * 12.14728 * 3 2 1 26 26 H 1.08998 * 109.46800 * 132.14563 * 3 2 1 27 27 H 0.96998 * 119.99981 * 180.02562 * 8 7 5 28 28 H 1.08004 * 125.13306 * 0.03492 * 16 15 13 29 29 H 1.08004 * 119.22964 * 179.97438 * 21 20 19 30 30 H 1.07997 * 120.33759 * 179.97438 * 22 21 20 31 31 H 1.08000 * 120.97188 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0961 0.4244 1.3147 5 6 3.3453 -0.5086 2.2859 6 1 4.0149 -0.2745 3.1004 7 6 2.7366 -1.7563 2.2234 8 7 1.6079 -1.9046 1.5668 9 14 3.5228 -3.2227 3.0726 10 1 3.6344 -2.9505 4.5282 11 1 2.6825 -4.4281 2.8580 12 1 4.8762 -3.4550 2.5073 13 6 3.3000 1.7322 1.5684 14 8 2.9853 2.5687 0.7423 15 6 3.9019 2.1481 2.8416 16 6 4.9885 1.5932 3.4525 17 7 5.2468 2.2489 4.6109 18 1 5.9734 2.0347 5.2167 19 6 4.3310 3.2578 4.8103 20 7 4.1677 4.1520 5.7766 21 6 3.1933 5.0361 5.7431 22 6 2.2873 5.0770 4.6952 23 6 2.4078 4.1679 3.6595 24 6 3.4476 3.2421 3.7178 25 1 2.9718 -1.0038 -0.2162 26 1 2.9709 0.6904 -0.7620 27 1 1.1828 -2.7755 1.5235 28 1 5.5583 0.7594 3.0698 29 1 3.0971 5.7458 6.5515 30 1 1.4948 5.8107 4.6877 31 1 1.7168 4.1760 2.8295 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355706886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = 62.981474 kcal Electronic energy + Delta-G solvation = -19839.340716 eV Core-core repulsion = 16700.566211 eV Total energy + Delta-G solvation = -3138.774506 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.54051 -40.33754 -38.67934 -37.34465 -36.16983 -33.84778 -33.49535 -31.35564 -30.61391 -28.82440 -26.77023 -24.69651 -23.56244 -23.30038 -20.69606 -19.77771 -19.10554 -18.16766 -17.64673 -17.15180 -16.89157 -16.26118 -16.07398 -15.96985 -15.48581 -15.00051 -14.70332 -14.37351 -14.20476 -13.87974 -13.70659 -13.40723 -13.21967 -13.03626 -12.86630 -12.73863 -12.24379 -12.20422 -11.97315 -11.32643 -11.13409 -10.73741 -10.31183 -9.93197 -9.42413 -8.89168 -8.32793 -5.91830 0.01227 0.41187 1.21814 1.52310 1.58693 1.65141 1.82712 1.90573 2.33869 2.39506 2.46041 2.94756 3.10813 3.17695 3.62538 3.73975 3.88517 3.96909 4.12099 4.28864 4.46538 4.58730 4.72651 4.76687 4.88261 4.95542 5.30903 5.45665 5.52496 5.54485 5.73630 5.95342 6.36346 6.43043 7.05381 7.11675 7.14079 7.50048 7.90319 8.70485 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.007108 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.237503 B = 3938.267899 C = 4798.902942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.265 3.735 3 C 0.233 3.767 4 N -0.442 5.442 5 C -0.356 4.356 6 H 0.128 0.872 7 C 0.001 3.999 8 N -0.893 5.893 9 Si 0.987 3.013 10 H -0.272 1.272 11 H -0.300 1.300 12 H -0.248 1.248 13 C 0.532 3.468 14 O -0.627 6.627 15 C -0.220 4.220 16 C 0.135 3.865 17 N -0.554 5.554 18 H 0.438 0.562 19 C 0.262 3.738 20 N -0.507 5.507 21 C 0.130 3.870 22 C -0.189 4.189 23 C -0.054 4.054 24 C -0.143 4.143 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.270 0.730 28 H 0.223 0.777 29 H 0.203 0.797 30 H 0.169 0.831 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.201 5.127 7.143 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.052 4.052 3 C 0.106 3.894 4 N -0.160 5.160 5 C -0.482 4.482 6 H 0.145 0.855 7 C -0.202 4.202 8 N -0.530 5.530 9 Si 0.811 3.189 10 H -0.197 1.197 11 H -0.226 1.226 12 H -0.172 1.172 13 C 0.324 3.676 14 O -0.514 6.514 15 C -0.230 4.230 16 C 0.003 3.997 17 N -0.161 5.161 18 H 0.280 0.720 19 C 0.029 3.971 20 N -0.221 5.221 21 C -0.036 4.036 22 C -0.209 4.209 23 C -0.080 4.080 24 C -0.151 4.151 25 H 0.142 0.858 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.239 0.761 29 H 0.219 0.781 30 H 0.186 0.814 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.980 5.247 7.434 12.785 hybrid contribution -0.320 -1.120 -0.340 1.213 sum 8.660 4.127 7.095 11.932 Atomic orbital electron populations 1.80775 1.15022 1.13414 1.10941 1.29604 0.95908 0.89170 0.90541 1.18699 0.80315 1.03235 0.87161 1.43674 1.56418 1.04873 1.11059 1.20211 1.28070 0.92702 1.07218 0.85505 1.26142 0.93931 1.02063 0.98099 1.69945 1.14393 1.25132 1.43516 0.85083 0.78924 0.76404 0.78530 1.19696 1.22598 1.17216 1.17656 0.81914 0.81912 0.86161 1.90634 1.58397 1.52473 1.49911 1.19822 1.02748 1.01894 0.98572 1.22581 0.96693 0.95889 0.84497 1.41212 1.27341 1.26630 1.20921 0.72038 1.18475 0.92323 0.93409 0.92855 1.66578 1.24211 1.05137 1.26173 1.23114 0.88154 0.94344 0.97962 1.22216 1.02905 1.01050 0.94764 1.21149 0.95285 0.93046 0.98568 1.19832 0.99198 0.99043 0.97005 0.85828 0.86973 0.92026 0.76074 0.78058 0.81394 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.89 18.54 20.01 0.37 -27.52 16 2 C 0.26 13.17 12.93 89.44 1.16 14.32 16 3 C 0.23 9.92 5.13 84.57 0.43 10.36 16 4 N -0.44 -19.90 2.58 -649.75 -1.67 -21.57 16 5 C -0.36 -15.47 8.85 84.07 0.74 -14.73 16 6 H 0.13 4.89 4.59 -2.91 -0.01 4.88 16 7 C 0.00 0.03 4.78 84.93 0.41 0.43 16 8 N -0.89 -44.55 9.55 21.67 0.21 -44.34 16 9 Si 0.99 35.17 29.62 68.60 2.03 37.20 16 10 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 11 H -0.30 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.25 -7.96 7.11 99.48 0.71 -7.26 16 13 C 0.53 24.64 7.51 86.49 0.65 25.29 16 14 O -0.63 -32.42 16.77 -4.35 -0.07 -32.49 16 15 C -0.22 -8.77 5.46 -19.05 -0.10 -8.88 16 16 C 0.13 4.00 9.64 83.69 0.81 4.80 16 17 N -0.55 -14.56 5.97 -191.70 -1.14 -15.71 16 18 H 0.44 7.84 8.96 -92.71 -0.83 7.01 16 19 C 0.26 8.58 8.41 133.76 1.12 9.70 16 20 N -0.51 -15.08 10.39 -192.79 -2.00 -17.08 16 21 C 0.13 3.15 11.14 84.81 0.95 4.10 16 22 C -0.19 -4.97 10.11 22.38 0.23 -4.74 16 23 C -0.05 -1.94 10.21 22.56 0.23 -1.71 16 24 C -0.14 -5.54 6.38 -20.06 -0.13 -5.67 16 25 H 0.12 4.89 7.15 -2.38 -0.02 4.87 16 26 H 0.11 4.29 7.54 -2.39 -0.02 4.27 16 27 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 28 H 0.22 5.00 7.23 -2.91 -0.02 4.98 16 29 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -70.62 283.23 4.59 -66.04 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.38 Total: 22.19 kcal Atomic # 6 Polarization: 26.79 SS G_CDS: 6.49 Total: 33.28 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -4.24 Total: -126.22 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.07 Total: -32.49 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -70.62 4.59 -66.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355706886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.019 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds