Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47336 * 222.27114 * 3 2 1 5 5 C 1.36828 * 119.99710 * 269.57606 * 4 3 2 6 6 H 1.07996 * 120.00043 * 194.33191 * 5 4 3 7 7 C 1.39065 * 119.99927 * 14.32789 * 5 4 3 8 8 N 1.31355 * 120.00160 * 12.06208 * 7 5 4 9 9 Si 1.86798 * 119.99724 * 192.06189 * 7 5 4 10 10 H 1.48497 * 109.47524 * 90.00287 * 9 7 5 11 11 H 1.48502 * 109.47272 * 209.99869 * 9 7 5 12 12 H 1.48500 * 109.47219 * 329.99904 * 9 7 5 13 13 C 1.34779 * 120.00327 * 89.56820 * 4 3 2 14 14 O 1.21640 * 119.99793 * 184.93656 * 13 4 3 15 15 C 1.47318 * 119.99633 * 4.94376 * 13 4 3 16 16 C 1.39112 * 120.29994 * 303.69693 * 15 13 4 17 17 C 1.38460 * 120.35485 * 180.02562 * 16 15 13 18 18 C 1.37858 * 120.80370 * 0.02562 * 17 16 15 19 19 C 1.39230 * 120.21016 * 359.95138 * 18 17 16 20 20 N 1.37221 * 133.64139 * 179.70177 * 19 18 17 21 21 H 0.97001 * 125.98172 * 0.02562 * 20 19 18 22 22 N 1.40029 * 108.02652 * 179.97438 * 20 19 18 23 23 C 1.30280 * 109.70012 * 0.34376 * 22 20 19 24 24 C 1.40663 * 119.79618 * 0.02562 * 19 18 17 25 25 H 1.08997 * 109.47361 * 102.26415 * 3 2 1 26 26 H 1.09006 * 109.47238 * 342.26832 * 3 2 1 27 27 H 0.97005 * 119.99854 * 179.97438 * 8 7 5 28 28 H 1.07997 * 119.81878 * 359.97438 * 16 15 13 29 29 H 1.08006 * 119.60236 * 179.97438 * 17 16 15 30 30 H 1.07997 * 119.89846 * 179.97438 * 18 17 16 31 31 H 1.08001 * 125.64964 * 179.81791 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 1.0229 0.9290 5 6 3.3317 2.2951 0.4840 6 1 3.9014 2.9828 1.0914 7 6 2.8378 2.7027 -0.7504 8 7 1.9547 1.9627 -1.3813 9 14 3.4302 4.3025 -1.5114 10 1 4.6232 4.0375 -2.3551 11 1 2.3500 4.8818 -2.3497 12 1 3.7884 5.2601 -0.4344 13 6 3.3125 0.7103 2.2221 14 8 3.6310 1.5783 3.0125 15 6 3.1635 -0.6827 2.6779 16 6 1.9662 -1.3622 2.4783 17 6 1.8248 -2.6712 2.9068 18 6 2.8627 -3.3238 3.5372 19 6 4.0737 -2.6709 3.7512 20 7 5.2579 -3.0401 4.3380 21 1 5.4525 -3.9036 4.7347 22 7 6.1365 -1.9524 4.2626 23 6 5.5469 -0.9517 3.6724 24 6 4.2361 -1.3411 3.3225 25 1 2.9713 0.2191 -1.0042 26 1 2.9718 -0.9781 0.3130 27 1 1.6099 2.2472 -2.2422 28 1 1.1424 -0.8658 1.9872 29 1 0.8897 -3.1872 2.7459 30 1 2.7363 -4.3447 3.8658 31 1 5.9883 0.0155 3.4819 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355730194.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = 86.160647 kcal Electronic energy + Delta-G solvation = -19998.233938 eV Core-core repulsion = 16860.464557 eV Total energy + Delta-G solvation = -3137.769381 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.50248 -40.65039 -37.82708 -37.64893 -36.16940 -33.93735 -33.31078 -30.95775 -30.60011 -29.17411 -27.00696 -24.58538 -23.45393 -22.73389 -21.36513 -19.85581 -18.93686 -18.20040 -17.87532 -17.31295 -16.58618 -16.18250 -15.99295 -15.82408 -15.68350 -14.92058 -14.82457 -14.75207 -14.28300 -13.84073 -13.35992 -13.15052 -12.99093 -12.85222 -12.72529 -12.55092 -12.27210 -12.13529 -12.10320 -11.97944 -11.31049 -11.16387 -10.54442 -10.03994 -9.66343 -8.97991 -8.40831 -6.01119 -0.33453 0.42878 1.37444 1.47648 1.49877 1.58592 1.77177 1.83879 1.99438 2.28143 2.35103 2.72863 2.97985 3.06382 3.57324 3.66889 3.70720 3.95074 4.06098 4.09349 4.36319 4.52468 4.68835 4.77496 4.91777 4.97528 5.28678 5.37609 5.43509 5.47235 5.76297 5.96029 6.34858 6.37024 6.60594 7.00920 7.04689 7.26734 7.82296 8.59186 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.006616 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.979221 B = 4231.114035 C = 5082.749921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.269 3.731 3 C 0.222 3.778 4 N -0.440 5.440 5 C -0.335 4.335 6 H 0.089 0.911 7 C 0.004 3.996 8 N -0.896 5.896 9 Si 0.995 3.005 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.482 3.518 14 O -0.610 6.610 15 C -0.043 4.043 16 C -0.143 4.143 17 C -0.062 4.062 18 C -0.112 4.112 19 C 0.124 3.876 20 N -0.492 5.492 21 H 0.457 0.543 22 N -0.262 5.262 23 C 0.073 3.927 24 C -0.166 4.166 25 H 0.133 0.867 26 H 0.116 0.884 27 H 0.278 0.722 28 H 0.111 0.889 29 H 0.168 0.832 30 H 0.175 0.825 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 -13.582 3.763 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.047 4.047 3 C 0.096 3.904 4 N -0.158 5.158 5 C -0.462 4.462 6 H 0.107 0.893 7 C -0.198 4.198 8 N -0.535 5.535 9 Si 0.819 3.181 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.201 1.201 13 C 0.272 3.728 14 O -0.496 6.496 15 C -0.049 4.049 16 C -0.163 4.163 17 C -0.082 4.082 18 C -0.134 4.134 19 C 0.006 3.994 20 N -0.210 5.210 21 H 0.306 0.694 22 N -0.078 5.078 23 C -0.122 4.122 24 C -0.175 4.175 25 H 0.151 0.849 26 H 0.134 0.866 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.185 0.815 30 H 0.192 0.808 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.471 -13.544 4.510 14.691 hybrid contribution -0.174 1.346 -0.710 1.531 sum 3.297 -12.198 3.800 13.195 Atomic orbital electron populations 1.80903 1.14149 1.12114 1.11473 1.29345 0.95467 0.89737 0.90186 1.19097 0.80872 0.92145 0.98293 1.43699 1.55683 1.10011 1.06435 1.19794 1.33423 0.89896 1.03127 0.89270 1.25986 0.94614 1.02403 0.96753 1.69776 1.27032 1.39940 1.16756 0.84878 0.78135 0.77166 0.77908 1.18409 1.20825 1.20141 1.18542 0.83562 0.88691 0.81978 1.90623 1.54262 1.50948 1.53799 1.19382 0.94525 0.92330 0.98688 1.21329 0.95835 0.96462 1.02704 1.21202 0.99761 0.92480 0.94794 1.20550 0.88766 1.01784 1.02282 1.19002 0.90080 0.93534 0.96750 1.45996 1.07896 1.14467 1.52686 0.69389 1.76671 1.16796 0.95033 1.19275 1.23937 0.92469 0.98766 0.97041 1.18820 0.95409 0.95368 1.07886 0.84931 0.86602 0.91168 0.87092 0.81469 0.80779 0.79570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.26 18.36 20.01 0.37 -22.89 16 2 C 0.27 11.71 10.64 89.44 0.95 12.66 16 3 C 0.22 8.97 4.75 84.57 0.40 9.38 16 4 N -0.44 -21.01 2.58 -649.29 -1.67 -22.68 16 5 C -0.34 -17.43 9.42 84.11 0.79 -16.63 16 6 H 0.09 4.95 7.32 -2.91 -0.02 4.93 16 7 C 0.00 0.19 5.15 84.96 0.44 0.63 16 8 N -0.90 -43.55 8.62 21.68 0.19 -43.36 16 9 Si 1.00 39.87 29.57 68.60 2.03 41.90 16 10 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 11 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 13 C 0.48 22.89 6.96 86.63 0.60 23.50 16 14 O -0.61 -33.54 16.75 -4.16 -0.07 -33.61 16 15 C -0.04 -1.63 4.66 -19.90 -0.09 -1.73 16 16 C -0.14 -4.62 7.76 22.53 0.17 -4.45 16 17 C -0.06 -1.39 9.99 22.23 0.22 -1.16 16 18 C -0.11 -2.16 10.06 22.42 0.23 -1.94 16 19 C 0.12 3.18 7.32 39.13 0.29 3.46 16 20 N -0.49 -11.16 7.45 -51.56 -0.38 -11.54 16 21 H 0.46 6.39 8.96 -213.36 -1.91 4.47 16 22 N -0.26 -7.71 12.58 -56.46 -0.71 -8.42 16 23 C 0.07 2.43 11.84 85.64 1.01 3.44 16 24 C -0.17 -5.64 6.01 -21.19 -0.13 -5.77 16 25 H 0.13 5.47 6.26 -2.39 -0.01 5.46 16 26 H 0.12 3.83 6.17 -2.38 -0.01 3.82 16 27 H 0.28 13.00 8.31 -92.70 -0.77 12.23 16 28 H 0.11 4.06 5.10 -2.91 -0.01 4.05 16 29 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.19 6.30 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -67.88 278.09 3.94 -63.94 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -0.70 Total: 15.27 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 4.89 Total: 21.39 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -2.21 Total: -108.89 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.07 Total: -33.61 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -67.88 3.94 -63.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355730194.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.100 kcal (2) G-P(sol) polarization free energy of solvation -67.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds