Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35941 * 116.99582 * 2 1 4 4 C 1.38642 * 120.00121 * 359.97438 * 3 2 1 5 5 C 1.38737 * 119.89884 * 179.97438 * 4 3 2 6 6 N 1.39832 * 120.05191 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99903 * 0.02562 * 6 5 4 8 8 C 1.50706 * 109.47106 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.39125 * 119.89548 * 0.25361 * 5 4 3 17 17 F 1.35099 * 120.00107 * 179.74449 * 16 5 4 18 18 C 1.38242 * 119.99566 * 359.46831 * 16 5 4 19 19 C 1.38276 * 120.10361 * 0.55161 * 18 16 5 20 20 N 1.48029 * 119.94928 * 179.72502 * 19 18 16 21 21 O 1.21798 * 119.99662 * 359.97438 * 20 19 18 22 22 O 1.21797 * 120.00019 * 179.97438 * 20 19 18 23 23 H 1.08994 * 109.47548 * 300.00183 * 1 2 3 24 24 H 1.09001 * 109.46959 * 60.00583 * 1 2 3 25 25 H 1.09006 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.05301 * 359.97438 * 4 3 2 27 27 H 0.96998 * 119.99905 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47001 * 59.99664 * 7 6 5 29 29 H 1.09000 * 109.47574 * 299.99880 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.08003 * 119.94527 * 180.28030 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2909 2.3740 -0.0005 5 6 1.9229 3.6091 0.0000 6 7 1.1644 4.7838 -0.0011 7 6 -0.2988 4.7109 -0.0022 8 6 -0.8712 6.1051 -0.0026 9 1 -0.2110 6.9598 -0.0025 10 6 -2.2375 6.2893 -0.0031 11 7 -3.0414 5.2484 -0.0028 12 14 -2.9469 8.0174 -0.0043 13 1 -1.8398 9.0070 -0.0039 14 1 -3.7821 8.2088 -1.2172 15 1 -3.7829 8.2101 1.2078 16 6 3.3125 3.6770 -0.0043 17 9 3.9301 4.8785 -0.0090 18 6 4.0612 2.5149 0.0021 19 6 3.4313 1.2840 0.0012 20 7 4.2364 0.0418 0.0018 21 8 5.4528 0.1045 0.0027 22 8 3.6825 -1.0429 0.0015 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2123 2.3184 -0.0014 27 1 1.6070 5.6469 -0.0003 28 1 -0.6368 4.1800 0.8877 29 1 -0.6355 4.1793 -0.8922 30 1 -4.0027 5.3781 -0.0035 31 1 5.1399 2.5686 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362673375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = -66.388292 kcal Electronic energy + Delta-G solvation = -20286.341151 eV Core-core repulsion = 16678.894775 eV Total energy + Delta-G solvation = -3607.446376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.77980 -41.75350 -40.08465 -37.92608 -36.05455 -35.53017 -33.04978 -30.51363 -30.06307 -27.78354 -27.27992 -25.08683 -23.45308 -22.19915 -21.56542 -19.31672 -18.53910 -18.18652 -17.23374 -17.16665 -16.68625 -16.16634 -15.88526 -15.45307 -15.29112 -15.08056 -14.45786 -13.95958 -13.56669 -13.46435 -13.05745 -12.43842 -12.37390 -11.89162 -11.68801 -11.30794 -11.14338 -11.11512 -11.02652 -10.71361 -10.69001 -10.46719 -10.21537 -9.74579 -8.89323 -8.58853 -7.45870 -6.50959 -4.58532 0.32316 1.05341 1.73953 1.83924 2.98554 3.05172 3.13860 3.16338 3.37000 3.58902 4.10667 4.13940 4.46617 4.83188 4.87965 5.00640 5.12593 5.20521 5.36600 5.41648 5.54831 5.74478 5.97184 6.26280 6.59220 6.71139 6.90810 7.04552 7.20674 7.49892 7.56289 7.99379 8.13545 8.47633 9.09999 10.59374 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.004771 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.914537 B = 5866.865897 C = 6870.331342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.283 6.283 3 C 0.241 3.759 4 C -0.284 4.284 5 C 0.286 3.714 6 N -0.685 5.685 7 C 0.239 3.761 8 C -0.549 4.549 9 H 0.067 0.933 10 C 0.068 3.932 11 N -0.886 5.886 12 Si 0.908 3.092 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.022 4.022 17 F -0.133 7.133 18 C -0.012 4.012 19 C -0.140 4.140 20 N 0.057 4.943 21 O -0.207 6.207 22 O -0.160 6.160 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.163 0.837 27 H 0.406 0.594 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.269 0.731 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -5.311 0.007 8.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.193 6.193 3 C 0.190 3.810 4 C -0.310 4.310 5 C 0.165 3.835 6 N -0.301 5.301 7 C 0.119 3.881 8 C -0.587 4.587 9 H 0.085 0.915 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.735 3.265 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.046 4.046 17 F -0.112 7.112 18 C -0.033 4.033 19 C -0.229 4.229 20 N 0.568 4.432 21 O -0.411 6.411 22 O -0.376 6.376 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.126 0.874 26 H 0.180 0.820 27 H 0.242 0.758 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.574 -4.872 0.006 7.403 hybrid contribution -0.302 1.324 0.003 1.358 sum 5.272 -3.548 0.009 6.355 Atomic orbital electron populations 1.23315 0.77016 1.04727 1.02614 1.86372 1.22435 1.24500 1.85956 1.18266 0.88868 0.85779 0.88065 1.20555 1.01527 0.88557 1.20325 1.18062 0.88796 0.89095 0.87507 1.46070 1.09235 1.04415 1.70386 1.19498 0.71684 0.99239 0.97665 1.21132 0.92203 0.91228 1.54152 0.91487 1.24912 0.96593 0.98104 0.94020 1.69920 1.04199 1.29798 1.48377 0.86271 0.79180 0.83039 0.78016 1.19477 1.20530 1.20536 1.16530 0.88376 0.80964 1.18765 1.91476 1.82500 1.41950 1.95233 1.20263 1.01634 0.88027 0.93346 1.19564 0.87576 0.84773 1.31023 1.43101 1.00825 1.02296 0.97010 1.94474 0.96107 1.94059 1.56429 1.94539 1.74214 1.15216 1.53663 0.91630 0.91638 0.87398 0.82007 0.75809 0.94879 0.94873 0.92111 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.28 -4.19 8.50 -41.73 -0.35 -4.54 16 3 C 0.24 3.77 6.66 -39.26 -0.26 3.51 16 4 C -0.28 -4.45 8.30 -39.25 -0.33 -4.78 16 5 C 0.29 4.69 6.66 -83.69 -0.56 4.13 16 6 N -0.68 -12.38 5.73 -59.75 -0.34 -12.72 16 7 C 0.24 5.17 4.67 -5.19 -0.02 5.15 16 8 C -0.55 -13.26 9.28 -34.44 -0.32 -13.58 16 9 H 0.07 1.57 7.60 -52.49 -0.40 1.17 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -22.95 13.29 55.43 0.74 -22.21 16 12 Si 0.91 19.21 29.54 -169.99 -5.02 14.19 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 16 C -0.02 -0.33 7.31 -39.25 -0.29 -0.62 16 17 F -0.13 -2.00 16.64 2.25 0.04 -1.96 16 18 C -0.01 -0.17 9.52 -39.57 -0.38 -0.54 16 19 C -0.14 -2.25 6.87 -79.75 -0.55 -2.80 16 20 N 0.06 1.00 4.45 34.06 0.15 1.15 16 21 O -0.21 -3.62 18.44 -29.46 -0.54 -4.16 16 22 O -0.16 -2.92 17.23 -36.51 -0.63 -3.55 16 23 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 24 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 25 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.16 2.50 4.97 -52.48 -0.26 2.23 16 27 H 0.41 7.00 7.81 -40.82 -0.32 6.68 16 28 H 0.03 0.76 7.95 -51.93 -0.41 0.34 16 29 H 0.03 0.76 7.95 -51.93 -0.41 0.35 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.16 2.04 7.60 -52.48 -0.40 1.64 16 LS Contribution 285.31 15.07 4.30 4.30 Total: -1.00 -26.71 285.31 -6.03 -32.74 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.56 Total: 3.52 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.81 Total: -6.75 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.55 Total: -33.79 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.53 Total: -12.25 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.71 -6.03 -32.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362673375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.650 kcal (2) G-P(sol) polarization free energy of solvation -26.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds