Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35941 * 116.99582 * 2 1 4 4 C 1.38642 * 120.00121 * 359.97438 * 3 2 1 5 5 C 1.38737 * 119.89884 * 179.97438 * 4 3 2 6 6 N 1.39832 * 120.05191 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99903 * 0.02562 * 6 5 4 8 8 C 1.50706 * 109.47106 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.39125 * 119.89548 * 0.25361 * 5 4 3 17 17 F 1.35099 * 120.00107 * 179.74449 * 16 5 4 18 18 C 1.38242 * 119.99566 * 359.46831 * 16 5 4 19 19 C 1.38276 * 120.10361 * 0.55161 * 18 16 5 20 20 N 1.48029 * 119.94928 * 179.72502 * 19 18 16 21 21 O 1.21798 * 119.99662 * 359.97438 * 20 19 18 22 22 O 1.21797 * 120.00019 * 179.97438 * 20 19 18 23 23 H 1.08994 * 109.47548 * 300.00183 * 1 2 3 24 24 H 1.09001 * 109.46959 * 60.00583 * 1 2 3 25 25 H 1.09006 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.05301 * 359.97438 * 4 3 2 27 27 H 0.96998 * 119.99905 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47001 * 59.99664 * 7 6 5 29 29 H 1.09000 * 109.47574 * 299.99880 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.08003 * 119.94527 * 180.28030 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2909 2.3740 -0.0005 5 6 1.9229 3.6091 0.0000 6 7 1.1644 4.7838 -0.0011 7 6 -0.2988 4.7109 -0.0022 8 6 -0.8712 6.1051 -0.0026 9 1 -0.2110 6.9598 -0.0025 10 6 -2.2375 6.2893 -0.0031 11 7 -3.0414 5.2484 -0.0028 12 14 -2.9469 8.0174 -0.0043 13 1 -1.8398 9.0070 -0.0039 14 1 -3.7821 8.2088 -1.2172 15 1 -3.7829 8.2101 1.2078 16 6 3.3125 3.6770 -0.0043 17 9 3.9301 4.8785 -0.0090 18 6 4.0612 2.5149 0.0021 19 6 3.4313 1.2840 0.0012 20 7 4.2364 0.0418 0.0018 21 8 5.4528 0.1045 0.0027 22 8 3.6825 -1.0429 0.0015 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2123 2.3184 -0.0014 27 1 1.6070 5.6469 -0.0003 28 1 -0.6368 4.1800 0.8877 29 1 -0.6355 4.1793 -0.8922 30 1 -4.0027 5.3781 -0.0035 31 1 5.1399 2.5686 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362673375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = -80.764732 kcal Electronic energy + Delta-G solvation = -20286.964560 eV Core-core repulsion = 16678.894775 eV Total energy + Delta-G solvation = -3608.069785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.00032 -43.09520 -41.32603 -39.17797 -37.43114 -36.95722 -34.81516 -31.94636 -31.28448 -29.27828 -28.44065 -26.56263 -24.95206 -23.50968 -22.96750 -20.61183 -19.91771 -19.53947 -18.64197 -18.51093 -18.05618 -17.64668 -17.06750 -16.77473 -16.61072 -16.52269 -15.62151 -15.46892 -15.12050 -14.81025 -14.21153 -14.05615 -13.67779 -13.24549 -12.89650 -12.81542 -12.70753 -12.50937 -12.30484 -12.26024 -12.10380 -11.97113 -11.57543 -11.52726 -10.72820 -9.81659 -8.86264 -8.38209 -6.50989 -1.00926 -0.17239 0.39997 0.51800 1.39386 1.42521 1.52813 1.88116 2.10325 2.14679 2.39188 2.88180 2.99572 3.24489 3.58808 3.75570 4.08481 4.17686 4.28829 4.32020 4.51239 4.68480 4.74263 4.79830 5.10824 5.13422 5.38787 5.43860 5.73687 5.85186 6.01369 6.43653 6.69951 6.74563 7.21221 8.72755 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.004771 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.914537 B = 5866.865897 C = 6870.331342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.294 6.294 3 C 0.244 3.756 4 C -0.282 4.282 5 C 0.279 3.721 6 N -0.691 5.691 7 C 0.257 3.743 8 C -0.563 4.563 9 H 0.071 0.929 10 C 0.020 3.980 11 N -0.918 5.918 12 Si 0.970 3.030 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.278 1.278 16 C -0.016 4.016 17 F -0.130 7.130 18 C 0.002 3.998 19 C -0.146 4.146 20 N 0.056 4.944 21 O -0.201 6.201 22 O -0.183 6.183 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.136 0.864 26 H 0.162 0.838 27 H 0.410 0.590 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.271 0.729 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -4.835 0.007 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.203 6.203 3 C 0.192 3.808 4 C -0.308 4.308 5 C 0.161 3.839 6 N -0.309 5.309 7 C 0.135 3.865 8 C -0.601 4.601 9 H 0.089 0.911 10 C -0.181 4.181 11 N -0.556 5.556 12 Si 0.794 3.206 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.040 4.040 17 F -0.108 7.108 18 C -0.019 4.019 19 C -0.236 4.236 20 N 0.565 4.435 21 O -0.408 6.408 22 O -0.394 6.394 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.154 0.846 26 H 0.179 0.821 27 H 0.247 0.753 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.139 -4.449 0.006 7.582 hybrid contribution -0.412 1.095 0.003 1.170 sum 5.727 -3.354 0.009 6.637 Atomic orbital electron populations 1.23606 0.75117 1.06715 1.02886 1.86377 1.24376 1.24097 1.85484 1.18311 0.88902 0.86062 0.87496 1.20545 1.01575 0.88475 1.20183 1.18199 0.89318 0.88679 0.87685 1.45706 1.07862 1.05185 1.72182 1.19032 0.73634 0.97722 0.96086 1.21520 0.92611 0.92462 1.53481 0.91091 1.25714 0.97111 1.01487 0.93787 1.70011 1.04466 1.31614 1.49489 0.85317 0.78432 0.78983 0.77824 1.18800 1.20399 1.20410 1.16439 0.87757 0.81295 1.18544 1.91490 1.82336 1.41802 1.95212 1.20427 1.02674 0.87001 0.91796 1.19752 0.87769 0.84692 1.31358 1.43249 1.00884 1.02570 0.96817 1.94456 0.96304 1.94120 1.55869 1.94542 1.74260 1.15733 1.54845 0.91345 0.91353 0.84636 0.82075 0.75345 0.96508 0.96499 0.91997 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.29 -8.40 8.50 -71.68 -0.61 -9.01 16 3 C 0.24 7.37 6.66 22.48 0.15 7.52 16 4 C -0.28 -8.67 8.30 22.49 0.19 -8.48 16 5 C 0.28 8.90 6.66 38.20 0.25 9.16 16 6 N -0.69 -24.68 5.73 -342.96 -1.96 -26.64 16 7 C 0.26 11.18 4.67 85.64 0.40 11.58 16 8 C -0.56 -27.06 9.28 25.60 0.24 -26.82 16 9 H 0.07 3.27 7.60 -2.91 -0.02 3.25 16 10 C 0.02 1.00 5.46 84.65 0.46 1.47 16 11 N -0.92 -47.75 13.29 21.45 0.28 -47.47 16 12 Si 0.97 38.92 29.54 68.60 2.03 40.95 16 13 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 14 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 16 C -0.02 -0.45 7.31 22.48 0.16 -0.29 16 17 F -0.13 -3.65 16.64 44.97 0.75 -2.90 16 18 C 0.00 0.05 9.52 22.28 0.21 0.26 16 19 C -0.15 -4.48 6.87 36.50 0.25 -4.23 16 20 N 0.06 1.90 4.45 -46.16 -0.21 1.69 16 21 O -0.20 -6.66 18.44 18.89 0.35 -6.31 16 22 O -0.18 -6.50 17.23 25.63 0.44 -6.06 16 23 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 24 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 25 H 0.14 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.16 4.97 4.97 -2.91 -0.01 4.96 16 27 H 0.41 13.85 7.81 -92.71 -0.72 13.13 16 28 H 0.02 0.79 7.95 -2.39 -0.02 0.77 16 29 H 0.02 0.79 7.95 -2.39 -0.02 0.78 16 30 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 31 H 0.19 4.10 7.60 -2.91 -0.02 4.08 16 Total: -1.00 -55.12 285.31 4.97 -50.15 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.47 Total: 14.12 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 3.43 Total: -8.51 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.89 Total: -72.42 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.18 Total: -21.38 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.75 Total: -2.90 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -55.12 4.97 -50.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362673375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.619 kcal (2) G-P(sol) polarization free energy of solvation -55.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds