Wall clock time and date at job start Mon Mar 30 2020 01:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46898 * 110.99731 * 176.04807 * 12 2 1 14 14 C 1.46902 * 111.00157 * 299.99853 * 12 2 1 15 15 C 1.50694 * 109.47272 * 169.99926 * 14 12 2 16 16 N 1.28628 * 124.70302 * 89.72604 * 15 14 12 17 17 C 1.33607 * 115.76393 * 179.78973 * 16 15 14 18 18 C 1.47116 * 123.15274 * 180.24028 * 17 16 15 19 19 O 1.21553 * 119.99915 * 180.31095 * 18 17 16 20 20 O 1.34791 * 120.00065 * 0.30072 * 18 17 16 21 21 C 1.35291 * 113.68988 * 0.48930 * 17 16 15 22 22 S 1.70766 * 124.71216 * 270.02832 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47074 * 59.99893 * 13 12 2 28 28 H 1.09005 * 109.47151 * 179.97438 * 13 12 2 29 29 H 1.08994 * 109.47439 * 300.00049 * 13 12 2 30 30 H 1.08995 * 109.47447 * 290.00660 * 14 12 2 31 31 H 1.09009 * 109.46407 * 50.00356 * 14 12 2 32 32 H 0.96702 * 117.00307 * 180.02562 * 20 18 17 33 33 H 1.08000 * 125.59215 * 179.73631 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8579 -0.8913 3.6158 16 7 2.9488 -0.8385 4.2954 17 6 3.0332 -1.6857 5.3250 18 6 4.2042 -1.7593 6.2125 19 8 4.2224 -2.5565 7.1299 20 8 5.2569 -0.9427 6.0083 21 6 1.9430 -2.4734 5.4716 22 16 0.8120 -2.0824 4.2510 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 3.9186 0.2052 1.1591 28 1 3.8210 -1.3110 2.0862 29 1 3.8030 -1.3530 0.3066 30 1 2.0518 0.9344 2.5281 31 1 0.4722 0.1322 2.3563 32 1 6.0034 -1.0280 6.6171 33 1 1.8092 -3.2259 6.2346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378655371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:55 Heat of formation + Delta-G solvation = -33.941540 kcal Electronic energy + Delta-G solvation = -18245.566292 eV Core-core repulsion = 15205.740089 eV Total energy + Delta-G solvation = -3039.826203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67390 -39.18632 -37.00239 -36.20114 -33.06051 -31.14056 -29.12416 -27.89886 -26.22380 -24.86792 -23.67297 -21.68188 -20.00122 -19.57623 -18.96370 -17.57004 -16.36370 -16.33047 -16.00332 -15.37590 -14.88338 -14.55537 -14.15288 -13.53632 -13.44295 -13.31058 -12.46211 -12.37707 -11.92798 -11.83899 -11.68476 -11.19235 -11.04293 -10.98007 -10.79177 -10.70497 -10.23628 -10.16422 -9.98171 -9.70561 -9.62811 -9.06117 -8.89045 -8.46129 -7.35122 -6.05936 -4.10536 0.40063 1.21534 1.61063 1.72345 2.98738 3.08167 3.30518 3.34898 3.37916 4.08669 4.38283 4.88090 5.01560 5.11353 5.26296 5.30114 5.59613 5.90848 6.00795 6.22363 6.24818 6.43212 6.72613 6.80714 6.94725 7.03934 7.39529 7.42430 7.59207 7.77106 7.83414 8.07632 8.22623 8.47435 8.94683 9.54589 11.00930 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.004440 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.079394 B = 6304.408549 C = 6719.900571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.531 5.531 13 C 0.038 3.962 14 C 0.117 3.883 15 C 0.057 3.943 16 N -0.430 5.430 17 C 0.018 3.982 18 C 0.569 3.431 19 O -0.516 6.516 20 O -0.492 6.492 21 C -0.239 4.239 22 S 0.255 5.745 23 H 0.037 0.963 24 H 0.008 0.992 25 H 0.088 0.912 26 H 0.262 0.738 27 H 0.017 0.983 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.411 0.589 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 -3.562 14.617 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.108 3.892 3 H 0.021 0.979 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.258 5.258 13 C -0.110 4.110 14 C -0.014 4.014 15 C -0.224 4.224 16 N -0.145 5.145 17 C -0.117 4.117 18 C 0.411 3.589 19 O -0.406 6.406 20 O -0.302 6.302 21 C -0.382 4.382 22 S 0.514 5.486 23 H 0.056 0.944 24 H 0.027 0.973 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.269 0.731 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.412 -4.050 13.987 14.567 hybrid contribution 2.031 0.225 0.190 2.052 sum 1.618 -3.825 14.177 14.773 Atomic orbital electron populations 1.21907 0.97601 0.99864 1.00082 1.19304 0.92363 0.92267 0.85291 0.97910 1.21068 1.31277 1.12424 0.89541 0.91829 1.24909 0.95127 0.95047 0.98997 1.69868 1.36773 1.22906 1.23650 0.86563 0.79123 0.79741 0.82009 1.20198 1.21339 1.20330 1.62238 1.10395 1.52109 1.01009 1.22230 0.87809 0.99689 1.01312 1.20807 1.01925 0.92952 0.85753 1.27421 0.92540 1.00946 1.01453 1.67089 1.21400 1.21514 1.04528 1.19155 0.95021 0.99486 0.98025 1.19599 0.81407 0.76806 0.81093 1.90915 1.81069 1.37357 1.31225 1.84732 1.28116 1.58906 1.58452 1.26671 0.98837 1.06106 1.06567 1.83052 1.18746 1.29695 1.17146 0.94414 0.97272 0.89339 0.92847 0.96459 0.93423 0.90570 0.92279 0.88225 0.73084 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.76 37.16 0.33 -2.76 16 2 C 0.21 5.12 2.06 -68.86 -0.14 4.97 16 3 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 4 C -0.50 -13.31 7.93 -34.44 -0.27 -13.58 16 5 H 0.06 1.68 6.39 -52.49 -0.34 1.35 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.53 -10.97 4.61 -237.73 -1.10 -12.06 16 13 C 0.04 0.77 9.07 60.06 0.54 1.31 16 14 C 0.12 2.02 5.35 -4.98 -0.03 1.99 16 15 C 0.06 0.89 6.01 -13.62 -0.08 0.81 16 16 N -0.43 -7.04 9.67 -8.53 -0.08 -7.12 16 17 C 0.02 0.26 6.71 -84.54 -0.57 -0.30 16 18 C 0.57 7.90 8.31 34.33 0.29 8.18 16 19 O -0.52 -7.71 17.50 -19.31 -0.34 -8.05 16 20 O -0.49 -5.78 13.37 -40.74 -0.54 -6.33 16 21 C -0.24 -2.94 10.62 29.68 0.32 -2.63 16 22 S 0.25 3.09 22.92 -107.50 -2.46 0.63 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.01 0.17 6.20 -51.93 -0.32 -0.16 16 25 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.91 6.48 -51.93 -0.34 0.57 16 29 H 0.08 1.62 6.23 -51.93 -0.32 1.30 16 30 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 31 H 0.10 1.59 5.83 -51.92 -0.30 1.29 16 32 H 0.41 2.50 9.11 45.56 0.42 2.91 16 33 H 0.19 1.88 8.03 -52.49 -0.42 1.46 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -30.55 295.58 -6.95 -37.50 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.77 Total: -0.39 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 0.29 Total: -0.48 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.55 Total: -43.15 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.88 Total: -14.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.46 Total: 0.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.55 -6.95 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378655371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.557 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds