Wall clock time and date at job start Mon Mar 30 2020 01:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46898 * 110.99731 * 176.04807 * 12 2 1 14 14 C 1.46902 * 111.00157 * 299.99853 * 12 2 1 15 15 C 1.50694 * 109.47272 * 169.99926 * 14 12 2 16 16 N 1.28628 * 124.70302 * 89.72604 * 15 14 12 17 17 C 1.33607 * 115.76393 * 179.78973 * 16 15 14 18 18 C 1.47116 * 123.15274 * 180.24028 * 17 16 15 19 19 O 1.21553 * 119.99915 * 180.31095 * 18 17 16 20 20 O 1.34791 * 120.00065 * 0.30072 * 18 17 16 21 21 C 1.35291 * 113.68988 * 0.48930 * 17 16 15 22 22 S 1.70766 * 124.71216 * 270.02832 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47074 * 59.99893 * 13 12 2 28 28 H 1.09005 * 109.47151 * 179.97438 * 13 12 2 29 29 H 1.08994 * 109.47439 * 300.00049 * 13 12 2 30 30 H 1.08995 * 109.47447 * 290.00660 * 14 12 2 31 31 H 1.09009 * 109.46407 * 50.00356 * 14 12 2 32 32 H 0.96702 * 117.00307 * 180.02562 * 20 18 17 33 33 H 1.08000 * 125.59215 * 179.73631 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8579 -0.8913 3.6158 16 7 2.9488 -0.8385 4.2954 17 6 3.0332 -1.6857 5.3250 18 6 4.2042 -1.7593 6.2125 19 8 4.2224 -2.5565 7.1299 20 8 5.2569 -0.9427 6.0083 21 6 1.9430 -2.4734 5.4716 22 16 0.8120 -2.0824 4.2510 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 3.9186 0.2052 1.1591 28 1 3.8210 -1.3110 2.0862 29 1 3.8030 -1.3530 0.3066 30 1 2.0518 0.9344 2.5281 31 1 0.4722 0.1322 2.3563 32 1 6.0034 -1.0280 6.6171 33 1 1.8092 -3.2259 6.2346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378655371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:55 Heat of formation + Delta-G solvation = -56.295148 kcal Electronic energy + Delta-G solvation = -18246.535617 eV Core-core repulsion = 15205.740089 eV Total energy + Delta-G solvation = -3040.795528 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72199 -40.29663 -38.62363 -37.18996 -34.92636 -32.49357 -30.88471 -29.29397 -27.41759 -26.66730 -25.26099 -22.98169 -21.39926 -20.93567 -20.07501 -18.63764 -18.28832 -17.34708 -17.23842 -16.91650 -16.16548 -16.03120 -15.81710 -14.98106 -14.70733 -14.50722 -14.14685 -13.97405 -13.44651 -12.96065 -12.90877 -12.80988 -12.66970 -12.62563 -12.50109 -12.07752 -12.00865 -11.96115 -11.79389 -10.97164 -10.78230 -10.70434 -10.48237 -10.02388 -9.06029 -8.08724 -6.19674 -0.62761 0.20339 0.54296 0.62229 1.46217 1.46599 1.54224 1.99694 2.07770 2.45121 2.96587 3.20210 3.47080 3.80043 4.15049 4.26632 4.29592 4.51905 4.61095 4.73071 4.79497 4.98106 5.06200 5.11263 5.24463 5.37609 5.53404 5.73586 5.78894 6.25160 6.30768 6.41762 6.63653 6.92189 6.93630 7.48994 8.96861 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.004440 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.079394 B = 6304.408549 C = 6719.900571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.217 3.783 3 H -0.031 1.031 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.533 5.533 13 C 0.049 3.951 14 C 0.121 3.879 15 C 0.019 3.981 16 N -0.450 5.450 17 C -0.012 4.012 18 C 0.573 3.427 19 O -0.533 6.533 20 O -0.497 6.497 21 C -0.224 4.224 22 S 0.330 5.670 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.262 0.738 27 H 0.006 0.994 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.433 0.567 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 -4.901 15.615 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.110 3.890 3 H -0.014 1.014 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.258 5.258 13 C -0.100 4.100 14 C -0.009 4.009 15 C -0.260 4.260 16 N -0.166 5.166 17 C -0.146 4.146 18 C 0.415 3.585 19 O -0.424 6.424 20 O -0.309 6.309 21 C -0.367 4.367 22 S 0.589 5.411 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.295 0.705 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.882 -5.382 15.002 15.963 hybrid contribution 2.184 0.626 -0.014 2.272 sum 1.302 -4.757 14.988 15.779 Atomic orbital electron populations 1.21714 0.96429 0.99898 1.00280 1.19108 0.93227 0.90355 0.86268 1.01373 1.21355 1.31242 1.12366 0.90845 0.92379 1.25617 0.95356 0.95713 1.01620 1.69991 1.37619 1.23967 1.24118 0.85644 0.78543 0.78821 0.78805 1.19633 1.21031 1.20118 1.62141 1.10354 1.51992 1.01339 1.22095 0.87839 0.98911 1.01123 1.20724 1.02339 0.92847 0.85040 1.27039 0.94167 1.03015 1.01795 1.67013 1.22236 1.22288 1.05105 1.19350 0.96330 1.00472 0.98494 1.19525 0.81620 0.76646 0.80671 1.90902 1.81500 1.38119 1.31852 1.84688 1.28646 1.58306 1.59297 1.27083 0.97917 1.05223 1.06503 1.82762 1.16377 1.26644 1.15337 0.94262 0.94237 0.91992 0.92910 0.97526 0.92160 0.92041 0.93344 0.86948 0.70493 0.76986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 8.76 71.98 0.63 -4.98 16 2 C 0.22 10.52 2.06 44.17 0.09 10.61 16 3 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 4 C -0.52 -27.67 7.93 25.60 0.20 -27.47 16 5 H 0.06 3.09 6.39 -2.91 -0.02 3.08 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -51.12 11.32 21.45 0.24 -50.88 16 8 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.53 -21.87 4.61 -906.04 -4.18 -26.05 16 13 C 0.05 1.99 9.07 127.69 1.16 3.15 16 14 C 0.12 4.10 5.35 85.55 0.46 4.55 16 15 C 0.02 0.57 6.01 88.58 0.53 1.10 16 16 N -0.45 -14.20 9.67 -180.90 -1.75 -15.95 16 17 C -0.01 -0.33 6.71 40.52 0.27 -0.06 16 18 C 0.57 15.05 8.31 70.15 0.58 15.64 16 19 O -0.53 -15.02 17.50 19.66 0.34 -14.67 16 20 O -0.50 -11.05 13.37 -57.02 -0.76 -11.81 16 21 C -0.22 -4.86 10.62 67.14 0.71 -4.15 16 22 S 0.33 7.02 22.92 -56.49 -1.29 5.72 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 1.48 6.20 -2.39 -0.01 1.47 16 25 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 26 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 27 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 2.29 6.48 -2.38 -0.02 2.27 16 29 H 0.06 2.65 6.23 -2.39 -0.01 2.63 16 30 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.11 3.41 5.83 -2.38 -0.01 3.40 16 32 H 0.43 4.62 9.11 -74.06 -0.67 3.95 16 33 H 0.21 3.45 8.03 -2.91 -0.02 3.42 16 Total: -1.00 -65.28 295.58 0.20 -65.09 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 0.48 Total: 4.07 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.09 Total: -0.29 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -5.69 Total: -92.88 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.42 Total: -26.48 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -1.29 Total: 5.72 kcal Total: -65.28 0.20 -65.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378655371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.791 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds