Wall clock time and date at job start Mon Mar 30 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99847 * 2 1 4 4 H 1.48497 * 109.46802 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46887 * 300.00094 * 3 2 1 6 6 H 1.48499 * 109.47096 * 59.99892 * 3 2 1 7 7 C 1.37874 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99931 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99595 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46939 * 179.97438 * 11 10 9 13 13 N 1.29027 * 124.91507 * 89.96336 * 12 11 10 14 14 C 1.31778 * 117.12884 * 179.74889 * 13 12 11 15 15 C 1.33644 * 114.49769 * 0.52395 * 14 13 12 16 16 C 1.50697 * 126.03893 * 179.79132 * 15 14 13 17 17 O 1.44391 * 110.10971 * 296.45385 * 16 15 14 18 18 C 1.44843 * 103.23028 * 201.60171 * 17 16 15 19 19 C 1.54457 * 102.89613 * 36.61130 * 18 17 16 20 20 O 1.43779 * 110.11246 * 179.71245 * 16 15 14 21 21 S 1.70976 * 124.92109 * 270.00025 * 12 11 10 22 22 H 0.96996 * 120.00160 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46941 * 59.99886 * 9 7 2 24 24 H 1.09001 * 109.46740 * 299.99779 * 9 7 2 25 25 H 1.00897 * 111.00019 * 56.04758 * 10 9 7 26 26 H 1.09006 * 109.47214 * 60.00260 * 11 10 9 27 27 H 1.08995 * 109.47226 * 300.00025 * 11 10 9 28 28 H 1.08005 * 122.75679 * 180.32866 * 14 13 12 29 29 H 1.08998 * 110.09490 * 58.11465 * 16 15 14 30 30 H 1.08999 * 110.72528 * 278.25910 * 18 17 16 31 31 H 1.08997 * 110.72842 * 154.96166 * 18 17 16 32 32 H 1.09001 * 110.31687 * 97.10593 * 19 18 17 33 33 H 1.09005 * 110.31806 * 219.19877 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 6 2.5150 -6.0259 0.0005 13 7 3.0110 -6.5736 1.0582 14 6 3.8816 -7.5465 0.8791 15 6 4.1424 -7.8282 -0.4010 16 6 5.0950 -8.8837 -0.9004 17 8 6.4433 -8.5698 -0.4898 18 6 7.2574 -9.3095 -1.4321 19 6 6.4552 -9.1928 -2.7468 20 8 5.1073 -8.8983 -2.3380 21 16 3.1696 -6.7527 -1.4018 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8406 -3.5486 0.7819 26 1 0.8803 -4.9817 -0.8887 27 1 0.8809 -4.9812 0.8913 28 1 4.3487 -8.0712 1.6996 29 1 4.8039 -9.8620 -0.5180 30 1 7.3492 -10.3520 -1.1274 31 1 8.2398 -8.8493 -1.5375 32 1 6.8500 -8.3831 -3.3605 33 1 6.4889 -10.1340 -3.2956 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381483062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:41 Heat of formation + Delta-G solvation = -37.345375 kcal Electronic energy + Delta-G solvation = -17588.574798 eV Core-core repulsion = 14548.600994 eV Total energy + Delta-G solvation = -3039.973804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68748 -39.42797 -35.47382 -35.34686 -32.74579 -31.83914 -29.66685 -27.94535 -25.77974 -24.20698 -23.38422 -22.88580 -21.46274 -19.51658 -18.22419 -17.38279 -16.90371 -16.41366 -16.22733 -15.34879 -15.02450 -14.73215 -14.50530 -14.08865 -13.92385 -13.72600 -13.06817 -12.92304 -12.80133 -12.17296 -12.05840 -11.50641 -11.29391 -11.25413 -10.75860 -10.70738 -10.67141 -10.32533 -10.00822 -9.43699 -9.22493 -9.15534 -8.71224 -8.49596 -7.42806 -6.04429 -4.06335 0.72620 1.42591 1.96068 2.88687 3.22511 3.31976 3.39080 3.44890 3.54348 4.16103 4.31694 4.38805 4.45041 4.54271 4.86931 4.93493 5.01877 5.23830 5.27433 5.31815 5.41016 5.50465 5.62068 5.84146 6.02375 6.26163 6.52694 7.14049 7.35975 7.74016 7.86781 8.06874 8.29070 8.51543 9.02291 9.58562 11.06758 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.003500 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.057954 B = 7997.151858 C = 8333.389363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.128 3.872 12 C 0.067 3.933 13 N -0.482 5.482 14 C 0.074 3.926 15 C -0.277 4.277 16 C 0.318 3.682 17 O -0.364 6.364 18 C 0.013 3.987 19 C 0.020 3.980 20 O -0.379 6.379 21 S 0.204 5.796 22 H 0.261 0.739 23 H 0.032 0.968 24 H -0.008 1.008 25 H 0.337 0.663 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.172 0.828 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.283 -21.692 -3.963 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.005 4.005 12 C -0.209 4.209 13 N -0.197 5.197 14 C -0.080 4.080 15 C -0.399 4.399 16 C 0.221 3.779 17 O -0.285 6.285 18 C -0.064 4.064 19 C -0.056 4.056 20 O -0.300 6.300 21 S 0.461 5.539 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.009 0.991 25 H 0.153 0.847 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.189 0.811 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.738 -20.994 -5.182 24.143 hybrid contribution 0.693 0.260 1.658 1.816 sum 11.432 -20.734 -3.524 23.938 Atomic orbital electron populations 1.69967 1.06071 1.26779 1.50866 1.24981 0.94898 0.99400 0.95257 0.86403 0.80084 0.83198 0.77511 1.19626 1.20959 1.21055 1.21183 0.93628 0.90012 1.50426 0.91811 1.19620 0.90508 0.86911 0.96192 1.60819 1.21138 0.99929 1.49561 1.20530 0.91281 0.86490 1.02193 1.27475 1.01385 1.00750 0.91331 1.66412 1.11598 1.09804 1.31924 1.21539 0.95946 0.95413 0.95116 1.25639 1.08995 1.07348 0.97898 1.22084 0.82185 0.94125 0.79483 1.89587 1.16132 1.70106 1.52632 1.24300 0.96946 0.97806 0.87319 1.24000 0.81734 1.02518 0.97364 1.88951 1.28040 1.92601 1.20360 1.84103 1.33738 1.25466 1.10614 0.92901 0.95034 0.99053 0.84661 0.89363 0.92677 0.81072 0.88606 0.90461 0.87168 0.89480 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.09 5.44 -4.97 -0.03 5.06 16 10 N -0.68 -15.08 6.48 -116.34 -0.75 -15.83 16 11 C 0.13 2.36 6.26 -4.98 -0.03 2.33 16 12 C 0.07 1.15 6.90 -13.46 -0.09 1.06 16 13 N -0.48 -8.26 10.54 -11.86 -0.13 -8.39 16 14 C 0.07 1.08 11.25 -19.18 -0.22 0.86 16 15 C -0.28 -3.85 6.18 -35.92 -0.22 -4.07 16 16 C 0.32 3.60 4.37 36.00 0.16 3.76 16 17 O -0.36 -4.16 11.51 -59.28 -0.68 -4.84 16 18 C 0.01 0.09 7.81 37.92 0.30 0.39 16 19 C 0.02 0.15 8.08 37.92 0.31 0.46 16 20 O -0.38 -4.31 10.75 -59.28 -0.64 -4.94 16 21 S 0.20 3.07 22.61 -107.50 -2.43 0.64 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 24 H -0.01 -0.23 8.14 -51.93 -0.42 -0.65 16 25 H 0.34 7.46 8.71 -39.29 -0.34 7.11 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.17 2.02 8.06 -52.48 -0.42 1.59 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -32.59 303.27 -8.71 -41.30 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.11 Total: 0.38 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.25 Total: -3.65 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.14 Total: -50.29 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.32 Total: -9.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.43 Total: 0.64 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.59 -8.71 -41.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381483062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds