Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.33442 * 2 1 4 4 C 1.54477 * 110.37491 * 237.75017 * 2 1 3 5 5 C 1.54512 * 104.06256 * 217.19120 * 4 2 1 6 6 C 1.54473 * 104.06494 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.37565 * 265.14847 * 6 5 4 8 8 C 1.50699 * 110.37289 * 142.92043 * 6 5 4 9 9 N 1.29947 * 126.28906 * 285.02861 * 8 6 5 10 10 O 1.21295 * 110.25206 * 179.97438 * 9 8 6 11 11 C 1.33637 * 109.81454 * 0.02562 * 10 9 8 12 12 C 1.50694 * 126.55505 * 179.97438 * 11 10 9 13 13 S 1.81005 * 109.47188 * 269.97346 * 12 11 10 14 14 C 1.76197 * 99.99942 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00596 * 359.97438 * 14 13 12 16 16 C 1.38801 * 119.99918 * 180.02562 * 14 13 12 17 17 N 1.31630 * 119.99940 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46893 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47088 * 120.00039 * 18 16 14 21 21 H 1.48506 * 109.46918 * 240.00146 * 18 16 14 22 22 N 1.31135 * 106.89268 * 359.76431 * 11 10 9 23 23 O 1.44426 * 110.37331 * 122.36729 * 2 1 3 24 24 H 1.09002 * 109.47153 * 182.24826 * 1 2 3 25 25 H 1.09001 * 109.46832 * 62.25016 * 1 2 3 26 26 H 1.09004 * 109.47261 * 302.24998 * 1 2 3 27 27 H 1.09001 * 110.51003 * 335.83810 * 4 2 1 28 28 H 1.08996 * 110.51071 * 98.40930 * 4 2 1 29 29 H 1.08996 * 110.51024 * 118.64739 * 5 4 2 30 30 H 1.09003 * 110.50714 * 241.34964 * 5 4 2 31 31 H 1.09001 * 109.47205 * 29.97578 * 12 11 10 32 32 H 1.09001 * 109.47478 * 149.97153 * 12 11 10 33 33 H 0.97000 * 119.99862 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7727 -1.2247 5 6 3.3178 -1.5049 -0.6873 6 6 3.3877 -1.0875 0.7983 7 1 4.0530 -0.2329 0.9214 8 6 3.8559 -2.2420 1.6462 9 7 3.1540 -3.2817 1.9850 10 8 3.8174 -4.0309 2.6705 11 6 5.0425 -3.5247 2.8397 12 6 6.1690 -4.1444 3.6257 13 16 6.0902 -3.5770 5.3428 14 6 7.4799 -4.4297 6.0108 15 1 8.0770 -5.0688 5.3774 16 6 7.8066 -4.2808 7.3516 17 7 7.0786 -3.5022 8.1239 18 14 9.2795 -5.1853 8.0601 19 1 9.9262 -5.9903 6.9929 20 1 10.2532 -4.2012 8.5974 21 1 8.8295 -6.0840 9.1534 22 7 5.0785 -2.3878 2.1872 23 8 2.0328 -0.7248 1.1436 24 1 -0.3633 -1.0269 0.0403 25 1 -0.3633 0.4785 -0.9095 26 1 -0.3634 0.5484 0.8692 27 1 1.3276 -1.4902 -1.5788 28 1 2.3407 -0.0819 -2.0224 29 1 3.1956 -2.5844 -0.7758 30 1 4.2109 -1.1760 -1.2187 31 1 6.0776 -5.2302 3.5973 32 1 7.1228 -3.8486 3.1888 33 1 7.3067 -3.3985 9.0609 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398282057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = 14.450946 kcal Electronic energy + Delta-G solvation = -17774.757025 eV Core-core repulsion = 14737.029278 eV Total energy + Delta-G solvation = -3037.727747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.27412 -39.80137 -35.63374 -33.43016 -32.57068 -32.54407 -31.43333 -28.48764 -26.93910 -25.63078 -23.58521 -22.84053 -21.33207 -20.82951 -18.04873 -17.79139 -17.19331 -16.61597 -15.90466 -15.57009 -14.91184 -14.50885 -14.10954 -14.09068 -13.71793 -13.18750 -12.88554 -12.79288 -12.54127 -12.17776 -11.95494 -11.81085 -11.33229 -11.17454 -11.14344 -11.13533 -11.00166 -10.85679 -10.72699 -10.24625 -10.01509 -9.40134 -9.19057 -8.53127 -6.73313 -6.35389 -4.10010 1.37265 2.27693 3.04736 3.16719 3.21490 3.26315 3.32651 3.42071 3.93236 4.06789 4.20352 4.41808 4.53038 4.62195 4.84067 4.92080 5.02133 5.10873 5.16689 5.24472 5.34568 5.49179 5.52840 5.61552 5.70046 5.77359 5.79279 5.86974 5.90401 6.11762 6.25814 6.59887 7.49132 8.23484 8.45982 9.10577 10.72649 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.052550 B = 0.003405 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.697654 B = 8220.899495 C = 8405.554319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.143 4.143 6 C 0.173 3.827 7 H 0.103 0.897 8 C 0.165 3.835 9 N -0.368 5.368 10 O 0.081 5.919 11 C 0.228 3.772 12 C -0.043 4.043 13 S -0.082 6.082 14 C -0.526 4.526 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.925 3.075 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.279 1.279 22 N -0.476 5.476 23 O -0.356 6.356 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 4.500 -17.383 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.092 0.908 4 C -0.186 4.186 5 C -0.182 4.182 6 C 0.114 3.886 7 H 0.120 0.880 8 C -0.109 4.109 9 N -0.076 5.076 10 O 0.021 5.979 11 C 0.007 3.993 12 C -0.192 4.192 13 S 0.144 5.856 14 C -0.674 4.674 15 H 0.099 0.901 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.751 3.249 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.205 1.205 22 N -0.211 5.211 23 O -0.274 6.274 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.294 5.496 -16.921 20.072 hybrid contribution 1.955 -1.360 -0.029 2.382 sum -7.338 4.136 -16.950 18.927 Atomic orbital electron populations 1.21799 0.92838 1.03234 1.02465 1.23040 0.95703 0.95446 0.84737 0.90830 1.23010 0.97426 0.99823 0.98333 1.22956 0.99197 1.02150 0.93884 1.20849 0.85698 0.91526 0.90563 0.87963 1.25179 0.87570 0.96825 1.01279 1.74595 1.18463 1.04222 1.10362 1.85324 1.21373 1.40996 1.50203 1.28214 0.87677 0.89075 0.94290 1.21988 0.92752 1.02767 1.01645 1.85266 1.42138 1.63496 0.94695 1.22750 1.14008 1.33003 0.97609 0.90088 1.25038 0.97504 0.95244 0.95797 1.70012 1.38022 1.35512 1.06613 0.86013 0.80793 0.79154 0.78948 1.19385 1.20463 1.20458 1.71849 1.20073 1.15688 1.13513 1.89261 1.25570 1.74386 1.38193 0.91587 0.91014 0.91679 0.90221 0.90077 0.90311 0.89440 0.87826 0.87032 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.52 37.16 0.35 -0.87 16 2 C 0.07 0.68 3.92 -25.96 -0.10 0.57 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.23 6.63 -25.16 -0.17 -1.40 16 5 C -0.14 -1.50 6.62 -25.16 -0.17 -1.67 16 6 C 0.17 2.41 3.85 -27.11 -0.10 2.30 16 7 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 8 C 0.16 2.91 7.06 -156.38 -1.10 1.81 16 9 N -0.37 -6.94 12.15 30.89 0.38 -6.56 16 10 O 0.08 1.54 11.31 18.12 0.20 1.75 16 11 C 0.23 4.35 7.77 -13.06 -0.10 4.25 16 12 C -0.04 -0.83 6.30 36.00 0.23 -0.60 16 13 S -0.08 -2.06 21.42 -107.50 -2.30 -4.37 16 14 C -0.53 -14.14 9.50 30.94 0.29 -13.85 16 15 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 16 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 17 N -0.87 -25.06 13.22 55.49 0.73 -24.33 16 18 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 N -0.48 -9.07 11.55 -9.88 -0.11 -9.19 16 23 O -0.36 -5.20 11.02 -35.23 -0.39 -5.59 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.91 7.87 -51.93 -0.41 0.51 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 32 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 303.34 15.07 4.57 4.57 Total: -1.00 -31.43 303.34 -7.08 -38.50 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.17 Total: -2.81 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.97 Total: -7.54 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.00 Total: -40.07 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.18 Total: -3.84 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.30 Total: -4.37 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.43 -7.08 -38.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398282057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.954 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds