Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.33442 * 2 1 4 4 C 1.54477 * 110.37491 * 237.75017 * 2 1 3 5 5 C 1.54512 * 104.06256 * 217.19120 * 4 2 1 6 6 C 1.54473 * 104.06494 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.37565 * 265.14847 * 6 5 4 8 8 C 1.50699 * 110.37289 * 142.92043 * 6 5 4 9 9 N 1.29947 * 126.28906 * 285.02861 * 8 6 5 10 10 O 1.21295 * 110.25206 * 179.97438 * 9 8 6 11 11 C 1.33637 * 109.81454 * 0.02562 * 10 9 8 12 12 C 1.50694 * 126.55505 * 179.97438 * 11 10 9 13 13 S 1.81005 * 109.47188 * 269.97346 * 12 11 10 14 14 C 1.76197 * 99.99942 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00596 * 359.97438 * 14 13 12 16 16 C 1.38801 * 119.99918 * 180.02562 * 14 13 12 17 17 N 1.31630 * 119.99940 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46893 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47088 * 120.00039 * 18 16 14 21 21 H 1.48506 * 109.46918 * 240.00146 * 18 16 14 22 22 N 1.31135 * 106.89268 * 359.76431 * 11 10 9 23 23 O 1.44426 * 110.37331 * 122.36729 * 2 1 3 24 24 H 1.09002 * 109.47153 * 182.24826 * 1 2 3 25 25 H 1.09001 * 109.46832 * 62.25016 * 1 2 3 26 26 H 1.09004 * 109.47261 * 302.24998 * 1 2 3 27 27 H 1.09001 * 110.51003 * 335.83810 * 4 2 1 28 28 H 1.08996 * 110.51071 * 98.40930 * 4 2 1 29 29 H 1.08996 * 110.51024 * 118.64739 * 5 4 2 30 30 H 1.09003 * 110.50714 * 241.34964 * 5 4 2 31 31 H 1.09001 * 109.47205 * 29.97578 * 12 11 10 32 32 H 1.09001 * 109.47478 * 149.97153 * 12 11 10 33 33 H 0.97000 * 119.99862 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7727 -1.2247 5 6 3.3178 -1.5049 -0.6873 6 6 3.3877 -1.0875 0.7983 7 1 4.0530 -0.2329 0.9214 8 6 3.8559 -2.2420 1.6462 9 7 3.1540 -3.2817 1.9850 10 8 3.8174 -4.0309 2.6705 11 6 5.0425 -3.5247 2.8397 12 6 6.1690 -4.1444 3.6257 13 16 6.0902 -3.5770 5.3428 14 6 7.4799 -4.4297 6.0108 15 1 8.0770 -5.0688 5.3774 16 6 7.8066 -4.2808 7.3516 17 7 7.0786 -3.5022 8.1239 18 14 9.2795 -5.1853 8.0601 19 1 9.9262 -5.9903 6.9929 20 1 10.2532 -4.2012 8.5974 21 1 8.8295 -6.0840 9.1534 22 7 5.0785 -2.3878 2.1872 23 8 2.0328 -0.7248 1.1436 24 1 -0.3633 -1.0269 0.0403 25 1 -0.3633 0.4785 -0.9095 26 1 -0.3634 0.5484 0.8692 27 1 1.3276 -1.4902 -1.5788 28 1 2.3407 -0.0819 -2.0224 29 1 3.1956 -2.5844 -0.7758 30 1 4.2109 -1.1760 -1.2187 31 1 6.0776 -5.2302 3.5973 32 1 7.1228 -3.8486 3.1888 33 1 7.3067 -3.3985 9.0609 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398282057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = -7.399348 kcal Electronic energy + Delta-G solvation = -17775.704525 eV Core-core repulsion = 14737.029278 eV Total energy + Delta-G solvation = -3038.675247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.73930 -40.71175 -37.06354 -34.83393 -34.58958 -33.40666 -32.38132 -30.03299 -27.90287 -27.69659 -24.87616 -23.94332 -22.26135 -21.94236 -19.90786 -19.30682 -18.61084 -17.50233 -17.02250 -16.89587 -16.61963 -16.29549 -15.63322 -14.88092 -14.86321 -14.64537 -14.37309 -13.66504 -13.46131 -13.37053 -13.19310 -13.02749 -12.91517 -12.89376 -12.66730 -12.35762 -12.25866 -11.90076 -11.84453 -11.67222 -11.17212 -11.11159 -10.87973 -10.40292 -8.77308 -8.38786 -6.18927 -0.15862 0.82959 1.38115 1.44263 1.53588 1.60520 1.76462 2.15113 2.23440 2.82770 2.97489 3.00631 3.26160 3.49165 3.65081 3.82123 3.91860 4.07801 4.18261 4.25162 4.41183 4.43829 4.51699 4.61198 4.72852 4.80501 4.84869 4.93400 4.96442 5.13088 5.23790 5.43099 5.75434 6.18985 6.99402 7.04166 8.71043 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.052550 B = 0.003405 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.697654 B = 8220.899495 C = 8405.554319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 H 0.091 0.909 4 C -0.138 4.138 5 C -0.138 4.138 6 C 0.165 3.835 7 H 0.113 0.887 8 C 0.168 3.832 9 N -0.384 5.384 10 O 0.073 5.927 11 C 0.222 3.778 12 C -0.017 4.017 13 S -0.154 6.154 14 C -0.535 4.535 15 H 0.093 0.907 16 C 0.016 3.984 17 N -0.911 5.911 18 Si 1.001 2.999 19 H -0.255 1.255 20 H -0.276 1.276 21 H -0.275 1.275 22 N -0.486 5.486 23 O -0.391 6.391 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 4.526 -19.257 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.001 3.999 3 H 0.108 0.892 4 C -0.176 4.176 5 C -0.176 4.176 6 C 0.105 3.895 7 H 0.131 0.869 8 C -0.106 4.106 9 N -0.094 5.094 10 O 0.016 5.984 11 C 0.002 3.998 12 C -0.166 4.166 13 S 0.072 5.928 14 C -0.682 4.682 15 H 0.111 0.889 16 C -0.189 4.189 17 N -0.547 5.547 18 Si 0.822 3.178 19 H -0.178 1.178 20 H -0.201 1.201 21 H -0.200 1.200 22 N -0.222 5.222 23 O -0.310 6.310 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.598 5.510 -18.809 21.403 hybrid contribution 1.639 -1.304 0.457 2.144 sum -6.959 4.206 -18.352 20.073 Atomic orbital electron populations 1.21835 0.92007 1.02652 1.03663 1.23397 0.96470 0.96044 0.84007 0.89152 1.23017 0.96226 1.00056 0.98276 1.22971 1.01422 1.01532 0.91709 1.21195 0.85881 0.90571 0.91830 0.86906 1.25940 0.86820 0.97327 1.00484 1.74586 1.18758 1.04913 1.11107 1.85307 1.21303 1.41290 1.50493 1.28146 0.87738 0.89345 0.94579 1.21806 0.93595 1.03949 0.97282 1.85351 1.42750 1.64715 0.99993 1.23128 1.14049 1.32896 0.98165 0.88925 1.26115 1.00565 0.95979 0.96224 1.70158 1.40136 1.37346 1.07037 0.84867 0.76760 0.77831 0.78295 1.17798 1.20102 1.20049 1.71858 1.20996 1.15533 1.13764 1.89229 1.25838 1.75217 1.40759 0.92869 0.88033 0.92432 0.89946 0.86887 0.91822 0.87142 0.85478 0.85524 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.52 71.98 0.69 -1.51 16 2 C 0.06 1.02 3.92 31.10 0.12 1.14 16 3 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 4 C -0.14 -1.91 6.63 31.61 0.21 -1.70 16 5 C -0.14 -2.61 6.62 31.61 0.21 -2.40 16 6 C 0.16 4.41 3.85 30.35 0.12 4.53 16 7 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 8 C 0.17 5.88 7.06 138.46 0.98 6.86 16 9 N -0.38 -14.53 12.15 -60.34 -0.73 -15.26 16 10 O 0.07 2.81 11.31 74.89 0.85 3.66 16 11 C 0.22 8.45 7.77 88.38 0.69 9.14 16 12 C -0.02 -0.66 6.30 71.23 0.45 -0.21 16 13 S -0.15 -7.92 21.42 -56.49 -1.21 -9.13 16 14 C -0.53 -28.66 9.50 67.95 0.65 -28.01 16 15 H 0.09 4.58 7.80 -2.91 -0.02 4.55 16 16 C 0.02 0.88 5.49 84.86 0.47 1.35 16 17 N -0.91 -53.45 13.22 21.65 0.29 -53.17 16 18 Si 1.00 41.77 29.55 68.60 2.03 43.80 16 19 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 22 N -0.49 -18.35 11.55 -303.22 -3.50 -21.85 16 23 O -0.39 -11.22 11.02 -148.98 -1.64 -12.86 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.08 1.11 7.87 -2.39 -0.02 1.09 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.40 7.87 -2.39 -0.02 1.38 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 32 H 0.13 4.44 8.14 -2.39 -0.02 4.42 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -68.78 303.34 1.75 -67.03 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.11 Total: 8.59 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 4.57 Total: -10.81 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.95 Total: -90.28 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.80 Total: -9.20 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.21 Total: -9.13 kcal Total: -68.78 1.75 -67.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398282057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.630 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds