Wall clock time and date at job start Mon Mar 30 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.82311 * 2 1 4 4 C 1.54390 * 109.82923 * 239.11654 * 2 1 3 5 5 C 1.55305 * 102.24977 * 219.12731 * 4 2 1 6 6 C 1.54951 * 100.94116 * 34.13496 * 5 4 2 7 7 H 1.09001 * 110.31017 * 82.57116 * 6 5 4 8 8 C 1.50706 * 110.30536 * 204.63821 * 6 5 4 9 9 N 1.29943 * 126.28679 * 75.02680 * 8 6 5 10 10 O 1.21298 * 110.24871 * 179.97438 * 9 8 6 11 11 C 1.33638 * 109.81479 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.55371 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.46689 * 269.97200 * 12 11 10 14 14 C 1.76204 * 99.99833 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.38796 * 119.99887 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99993 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00202 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46902 * 90.00783 * 18 16 14 20 20 H 1.48500 * 109.46845 * 210.00270 * 18 16 14 21 21 H 1.48496 * 109.47139 * 330.00344 * 18 16 14 22 22 N 1.31134 * 106.89284 * 359.76222 * 11 10 9 23 23 O 1.43235 * 109.83303 * 120.98123 * 2 1 3 24 24 H 1.09007 * 109.46874 * 180.88510 * 1 2 3 25 25 H 1.08995 * 109.47450 * 300.88409 * 1 2 3 26 26 H 1.09005 * 109.47216 * 60.88798 * 1 2 3 27 27 H 1.09000 * 110.84720 * 100.94095 * 4 2 1 28 28 H 1.09001 * 111.01918 * 337.39603 * 4 2 1 29 29 H 1.08998 * 111.12869 * 276.21631 * 5 4 2 30 30 H 1.08998 * 111.15743 * 152.06738 * 5 4 2 31 31 H 1.09001 * 109.46740 * 29.97088 * 12 11 10 32 32 H 1.08995 * 109.47389 * 149.97030 * 12 11 10 33 33 H 0.97000 * 120.00224 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2464 5 6 3.2730 -1.5215 -0.6781 6 6 2.7747 -1.8451 0.7530 7 1 2.1415 -2.7322 0.7416 8 6 3.9448 -2.0505 1.6803 9 7 4.7096 -1.1215 2.1708 10 8 5.5608 -1.6111 2.8829 11 6 5.4157 -2.9392 2.9149 12 6 6.2682 -3.9170 3.6819 13 16 7.6504 -4.4552 2.6446 14 6 8.4563 -5.5586 3.7572 15 1 8.0537 -5.7173 4.7467 16 6 9.6092 -6.2229 3.3623 17 7 10.2116 -7.0468 4.1936 18 14 10.3060 -5.9479 1.6510 19 1 11.2674 -4.8166 1.6840 20 1 11.0041 -7.1776 1.1974 21 1 9.2006 -5.6310 0.7115 22 7 4.3862 -3.2284 2.1559 23 8 2.0160 -0.6936 1.1552 24 1 -0.3633 -1.0276 0.0159 25 1 -0.3634 0.5275 0.8819 26 1 -0.3634 0.5000 -0.8979 27 1 2.3672 -0.0408 -2.0167 28 1 1.3027 -1.4335 -1.6348 29 1 4.1620 -0.8915 -0.6514 30 1 3.4579 -2.4338 -1.2453 31 1 6.6541 -3.4357 4.5804 32 1 5.6665 -4.7814 3.9626 33 1 11.0175 -7.5109 3.9178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398282060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:05 Heat of formation + Delta-G solvation = 14.322040 kcal Electronic energy + Delta-G solvation = -17851.558697 eV Core-core repulsion = 14813.825361 eV Total energy + Delta-G solvation = -3037.733337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.37867 -39.92462 -35.73762 -33.53740 -32.65160 -32.57696 -31.47886 -28.61135 -27.05682 -25.77493 -23.70741 -22.78677 -21.67475 -20.69106 -18.11185 -17.91247 -17.53661 -16.55949 -16.27486 -15.16225 -14.95238 -14.45950 -14.36770 -14.26984 -13.83386 -13.27737 -12.96138 -12.94425 -12.51370 -12.18204 -12.04985 -12.01262 -11.62550 -11.35090 -11.21937 -11.18667 -11.12568 -10.94353 -10.80655 -10.08742 -9.92288 -9.55743 -9.14255 -8.79782 -7.16553 -6.41145 -4.18090 1.23317 2.15599 2.83076 3.04455 3.21497 3.23205 3.35826 3.44702 3.83280 4.07584 4.19082 4.30592 4.41907 4.54948 4.66685 4.81912 4.87056 4.97878 5.01092 5.22399 5.26196 5.38858 5.42884 5.54334 5.62256 5.65913 5.76287 5.81013 5.90713 6.01747 6.15476 6.69309 7.81756 8.31203 8.35408 9.02675 10.67716 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043312 B = 0.003766 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.312976 B = 7432.238006 C = 7783.913507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.146 4.146 6 C 0.178 3.822 7 H 0.105 0.895 8 C 0.161 3.839 9 N -0.369 5.369 10 O 0.083 5.917 11 C 0.221 3.779 12 C -0.012 4.012 13 S -0.165 6.165 14 C -0.512 4.512 15 H 0.096 0.904 16 C 0.098 3.902 17 N -0.873 5.873 18 Si 0.856 3.144 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.238 1.238 22 N -0.472 5.472 23 O -0.364 6.364 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.733 11.559 -9.495 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.100 0.900 4 C -0.186 4.186 5 C -0.184 4.184 6 C 0.119 3.881 7 H 0.122 0.878 8 C -0.112 4.112 9 N -0.076 5.076 10 O 0.022 5.978 11 C 0.001 3.999 12 C -0.160 4.160 13 S 0.061 5.939 14 C -0.659 4.659 15 H 0.114 0.886 16 C -0.111 4.111 17 N -0.509 5.509 18 Si 0.681 3.319 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.162 1.162 22 N -0.207 5.207 23 O -0.283 6.283 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.789 12.377 -10.663 22.720 hybrid contribution 0.418 -0.552 0.550 0.884 sum -15.371 11.825 -10.114 21.872 Atomic orbital electron populations 1.22145 0.94526 1.02812 1.02434 1.22773 0.94456 0.96452 0.84538 0.89952 1.23207 0.97546 0.99815 0.98055 1.23310 0.99076 1.02028 0.94009 1.20862 0.86829 0.91014 0.89389 0.87769 1.25451 0.99706 0.84711 1.01369 1.74596 1.01985 1.22475 1.08557 1.85328 1.41487 1.21642 1.49303 1.28204 0.93039 0.83735 0.94964 1.21710 0.98253 0.96561 0.99521 1.84626 1.26967 1.58560 1.23789 1.22081 1.13626 1.28614 1.01624 0.88581 1.24698 0.95265 0.93458 0.97721 1.69918 1.18973 1.26462 1.35553 0.86756 0.81441 0.78957 0.84761 1.19066 1.19651 1.16186 1.71850 1.10907 1.25333 1.12654 1.88509 1.69563 1.39849 1.30336 0.91978 0.91818 0.91322 0.89521 0.89826 0.89794 0.88722 0.87111 0.86320 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.44 37.16 0.35 -0.85 16 2 C 0.08 0.71 4.16 -26.00 -0.11 0.60 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.14 6.54 -24.78 -0.16 -1.31 16 5 C -0.15 -1.52 6.56 -24.48 -0.16 -1.68 16 6 C 0.18 2.34 4.01 -26.85 -0.11 2.23 16 7 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 8 C 0.16 2.69 7.16 -156.38 -1.12 1.57 16 9 N -0.37 -6.57 12.15 30.89 0.38 -6.20 16 10 O 0.08 1.49 11.31 18.11 0.20 1.69 16 11 C 0.22 3.99 7.77 -13.05 -0.10 3.89 16 12 C -0.01 -0.22 6.30 36.01 0.23 0.01 16 13 S -0.16 -3.81 19.39 -107.50 -2.08 -5.89 16 14 C -0.51 -13.85 10.04 30.94 0.31 -13.54 16 15 H 0.10 2.71 8.03 -52.49 -0.42 2.29 16 16 C 0.10 2.72 5.50 -17.43 -0.10 2.63 16 17 N -0.87 -25.25 13.97 55.49 0.78 -24.48 16 18 Si 0.86 20.50 27.74 -169.99 -4.72 15.78 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.24 -5.61 6.74 56.52 0.38 -5.23 16 22 N -0.47 -8.54 11.55 -9.87 -0.11 -8.65 16 23 O -0.36 -4.87 10.68 -35.23 -0.38 -5.25 16 24 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 29 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.85 8.14 -51.92 -0.42 1.42 16 32 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -30.52 300.73 -6.58 -37.10 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.21 Total: -2.20 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.97 Total: -6.44 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 1.04 Total: -39.33 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.17 Total: -3.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.72 Total: 15.78 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.08 Total: -5.89 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.52 -6.58 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398282060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.423 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds