Wall clock time and date at job start Mon Mar 30 2020 01:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.82311 * 2 1 4 4 C 1.54390 * 109.82923 * 239.11654 * 2 1 3 5 5 C 1.55305 * 102.24977 * 219.12731 * 4 2 1 6 6 C 1.54951 * 100.94116 * 34.13496 * 5 4 2 7 7 H 1.09001 * 110.31017 * 82.57116 * 6 5 4 8 8 C 1.50706 * 110.30536 * 204.63821 * 6 5 4 9 9 N 1.29943 * 126.28679 * 75.02680 * 8 6 5 10 10 O 1.21298 * 110.24871 * 179.97438 * 9 8 6 11 11 C 1.33638 * 109.81479 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.55371 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.46689 * 269.97200 * 12 11 10 14 14 C 1.76204 * 99.99833 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.38796 * 119.99887 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99993 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00202 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46902 * 90.00783 * 18 16 14 20 20 H 1.48500 * 109.46845 * 210.00270 * 18 16 14 21 21 H 1.48496 * 109.47139 * 330.00344 * 18 16 14 22 22 N 1.31134 * 106.89284 * 359.76222 * 11 10 9 23 23 O 1.43235 * 109.83303 * 120.98123 * 2 1 3 24 24 H 1.09007 * 109.46874 * 180.88510 * 1 2 3 25 25 H 1.08995 * 109.47450 * 300.88409 * 1 2 3 26 26 H 1.09005 * 109.47216 * 60.88798 * 1 2 3 27 27 H 1.09000 * 110.84720 * 100.94095 * 4 2 1 28 28 H 1.09001 * 111.01918 * 337.39603 * 4 2 1 29 29 H 1.08998 * 111.12869 * 276.21631 * 5 4 2 30 30 H 1.08998 * 111.15743 * 152.06738 * 5 4 2 31 31 H 1.09001 * 109.46740 * 29.97088 * 12 11 10 32 32 H 1.08995 * 109.47389 * 149.97030 * 12 11 10 33 33 H 0.97000 * 120.00224 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2464 5 6 3.2730 -1.5215 -0.6781 6 6 2.7747 -1.8451 0.7530 7 1 2.1415 -2.7322 0.7416 8 6 3.9448 -2.0505 1.6803 9 7 4.7096 -1.1215 2.1708 10 8 5.5608 -1.6111 2.8829 11 6 5.4157 -2.9392 2.9149 12 6 6.2682 -3.9170 3.6819 13 16 7.6504 -4.4552 2.6446 14 6 8.4563 -5.5586 3.7572 15 1 8.0537 -5.7173 4.7467 16 6 9.6092 -6.2229 3.3623 17 7 10.2116 -7.0468 4.1936 18 14 10.3060 -5.9479 1.6510 19 1 11.2674 -4.8166 1.6840 20 1 11.0041 -7.1776 1.1974 21 1 9.2006 -5.6310 0.7115 22 7 4.3862 -3.2284 2.1559 23 8 2.0160 -0.6936 1.1552 24 1 -0.3633 -1.0276 0.0159 25 1 -0.3634 0.5275 0.8819 26 1 -0.3634 0.5000 -0.8979 27 1 2.3672 -0.0408 -2.0167 28 1 1.3027 -1.4335 -1.6348 29 1 4.1620 -0.8915 -0.6514 30 1 3.4579 -2.4338 -1.2453 31 1 6.6541 -3.4357 4.5804 32 1 5.6665 -4.7814 3.9626 33 1 11.0175 -7.5109 3.9178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398282060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:04 Heat of formation + Delta-G solvation = -6.757110 kcal Electronic energy + Delta-G solvation = -17852.472758 eV Core-core repulsion = 14813.825361 eV Total energy + Delta-G solvation = -3038.647398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.76412 -40.77649 -37.08966 -34.85913 -34.68248 -33.44408 -32.36937 -30.07971 -27.93326 -27.88798 -24.94064 -23.87114 -22.51615 -21.72750 -19.94500 -19.31731 -18.82481 -17.64578 -17.26969 -17.11613 -16.28337 -15.88626 -15.77846 -15.10227 -14.90634 -14.71614 -14.53327 -13.71332 -13.55740 -13.43853 -13.36650 -13.07032 -13.01140 -12.87583 -12.74354 -12.41792 -12.27151 -11.96289 -11.86483 -11.80430 -11.20022 -11.17443 -10.75564 -10.59367 -9.09354 -8.51736 -6.26989 -0.22713 0.76035 1.20224 1.33054 1.45823 1.52007 1.73697 2.12442 2.22971 2.57623 2.81424 2.86730 2.96170 3.43070 3.62190 3.75089 3.95645 4.01014 4.15283 4.22828 4.37823 4.40985 4.56849 4.64556 4.70376 4.77494 4.81082 4.93003 4.96625 5.17400 5.31500 5.70813 5.87558 6.14079 6.91296 6.97106 8.60459 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043312 B = 0.003766 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.312976 B = 7432.238006 C = 7783.913507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.064 3.936 3 H 0.082 0.918 4 C -0.135 4.135 5 C -0.144 4.144 6 C 0.172 3.828 7 H 0.117 0.883 8 C 0.164 3.836 9 N -0.382 5.382 10 O 0.077 5.923 11 C 0.218 3.782 12 C 0.002 3.998 13 S -0.174 6.174 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.047 3.953 17 N -0.914 5.914 18 Si 0.913 3.087 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.232 1.232 22 N -0.481 5.481 23 O -0.390 6.390 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 12.402 -11.575 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.007 3.993 3 H 0.100 0.900 4 C -0.173 4.173 5 C -0.183 4.183 6 C 0.112 3.888 7 H 0.134 0.866 8 C -0.110 4.110 9 N -0.091 5.091 10 O 0.019 5.981 11 C -0.003 4.003 12 C -0.147 4.147 13 S 0.052 5.948 14 C -0.669 4.669 15 H 0.089 0.911 16 C -0.159 4.159 17 N -0.551 5.551 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.156 1.156 22 N -0.217 5.217 23 O -0.309 6.309 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.047 13.231 -12.738 25.058 hybrid contribution 0.676 -0.735 1.267 1.613 sum -16.370 12.496 -11.471 23.574 Atomic orbital electron populations 1.22125 0.92976 1.03088 1.03230 1.23058 0.95697 0.96290 0.84250 0.89990 1.23213 0.96545 0.99978 0.97518 1.23321 0.99612 1.02711 0.92615 1.21166 0.86013 0.91720 0.89855 0.86569 1.26179 1.00075 0.83871 1.00828 1.74594 1.02485 1.22915 1.09153 1.85318 1.41737 1.21485 1.49553 1.28028 0.93248 0.83826 0.95217 1.21630 0.96647 0.97225 0.99165 1.84368 1.28729 1.57569 1.24133 1.22249 1.13927 1.29194 1.01516 0.91144 1.25556 0.95705 0.93255 1.01344 1.70006 1.19805 1.27719 1.37589 0.85895 0.80927 0.79316 0.80398 1.18532 1.18547 1.15581 1.71863 1.11010 1.26110 1.12697 1.88484 1.69668 1.40144 1.32653 0.91876 0.92709 0.88914 0.87563 0.87845 0.91360 0.87496 0.85288 0.85379 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.44 71.98 0.68 -1.27 16 2 C 0.06 1.06 4.16 31.07 0.13 1.19 16 3 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.14 -1.66 6.54 31.86 0.21 -1.45 16 5 C -0.14 -2.70 6.56 32.05 0.21 -2.49 16 6 C 0.17 4.24 4.01 30.52 0.12 4.36 16 7 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 8 C 0.16 5.32 7.16 138.47 0.99 6.31 16 9 N -0.38 -13.39 12.15 -60.35 -0.73 -14.12 16 10 O 0.08 2.72 11.31 74.88 0.85 3.57 16 11 C 0.22 7.65 7.77 88.38 0.69 8.34 16 12 C 0.00 0.07 6.30 71.24 0.45 0.52 16 13 S -0.17 -7.88 19.39 -56.49 -1.10 -8.98 16 14 C -0.52 -28.38 10.04 67.95 0.68 -27.70 16 15 H 0.07 4.07 8.03 -2.91 -0.02 4.05 16 16 C 0.05 2.63 5.50 84.86 0.47 3.10 16 17 N -0.91 -53.47 13.97 21.65 0.30 -53.16 16 18 Si 0.91 41.85 27.74 68.60 1.90 43.76 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.23 -10.34 6.74 99.48 0.67 -9.67 16 22 N -0.48 -16.87 11.55 -303.23 -3.50 -20.37 16 23 O -0.39 -9.97 10.68 -148.98 -1.59 -11.56 16 24 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 0.90 7.86 -2.39 -0.02 0.88 16 29 H 0.07 1.49 8.05 -2.39 -0.02 1.47 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.13 4.17 8.14 -2.39 -0.02 4.15 16 32 H 0.13 4.40 8.14 -2.40 -0.02 4.38 16 33 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -65.23 300.73 1.83 -63.40 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.08 Total: 6.56 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.62 Total: -9.08 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.93 Total: -87.65 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.74 Total: -8.00 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.90 Total: 43.76 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.10 Total: -8.98 kcal Total: -65.23 1.83 -63.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398282060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.639 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds