Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.33001 * 2 1 4 4 C 1.54483 * 110.36779 * 122.24191 * 2 1 3 5 5 C 1.54512 * 104.05724 * 142.81165 * 4 2 1 6 6 C 1.54477 * 104.06572 * 359.97438 * 5 4 2 7 7 H 1.09004 * 110.36784 * 94.96416 * 6 5 4 8 8 C 1.50692 * 110.37404 * 217.18917 * 6 5 4 9 9 N 1.29947 * 126.28980 * 73.45205 * 8 6 5 10 10 O 1.21293 * 110.25357 * 180.02562 * 9 8 6 11 11 C 1.33644 * 109.81329 * 359.97438 * 10 9 8 12 12 C 1.50698 * 126.54982 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.47261 * 269.97500 * 12 11 10 14 14 C 1.76197 * 100.00086 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00125 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99736 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00011 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46996 * 89.99873 * 18 16 14 20 20 H 1.48499 * 109.47209 * 210.00046 * 18 16 14 21 21 H 1.48506 * 109.47204 * 330.00083 * 18 16 14 22 22 N 1.31131 * 106.89535 * 0.02562 * 11 10 9 23 23 O 1.44430 * 104.90029 * 336.08098 * 6 5 4 24 24 H 1.08998 * 109.47383 * 297.75572 * 1 2 3 25 25 H 1.08996 * 109.46644 * 57.75750 * 1 2 3 26 26 H 1.08995 * 109.46971 * 177.75670 * 1 2 3 27 27 H 1.09005 * 110.51085 * 24.17079 * 4 2 1 28 28 H 1.08994 * 110.51240 * 261.45554 * 4 2 1 29 29 H 1.09007 * 110.51158 * 241.35135 * 5 4 2 30 30 H 1.08998 * 110.62494 * 118.70656 * 5 4 2 31 31 H 1.08998 * 109.47571 * 29.98056 * 12 11 10 32 32 H 1.09006 * 109.46918 * 149.97882 * 12 11 10 33 33 H 0.97004 * 119.99351 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7726 1.2249 5 6 3.3178 -1.5049 0.6877 6 6 3.3870 -1.0886 -0.7983 7 1 4.0536 -0.2351 -0.9225 8 6 3.8527 -2.2443 -1.6458 9 7 3.1579 -3.2963 -1.9605 10 8 3.8166 -4.0428 -2.6534 11 6 5.0310 -3.5219 -2.8530 12 6 6.1489 -4.1338 -3.6574 13 16 7.1677 -5.1731 -2.5814 14 6 8.3602 -5.7432 -3.7464 15 1 8.3030 -5.4256 -4.7771 16 6 9.3732 -6.6006 -3.3396 17 7 10.2644 -7.0260 -4.2099 18 14 9.4717 -7.1505 -1.5571 19 1 8.6845 -8.3971 -1.3795 20 1 10.8893 -7.4045 -1.1951 21 1 8.9196 -6.0871 -0.6797 22 7 5.0640 -2.3766 -2.2152 23 8 2.0333 -0.7239 -1.1453 24 1 -0.3634 0.4786 0.9094 25 1 -0.3632 0.5483 -0.8692 26 1 -0.3633 -1.0268 -0.0402 27 1 1.3275 -1.4902 1.5789 28 1 2.3429 -0.0816 2.0217 29 1 3.1956 -2.5844 0.7762 30 1 4.2119 -1.1780 1.2184 31 1 5.7293 -4.7419 -4.4587 32 1 6.7636 -3.3421 -4.0859 33 1 10.9725 -7.6249 -3.9255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398282062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = 15.086395 kcal Electronic energy + Delta-G solvation = -17845.802479 eV Core-core repulsion = 14808.102287 eV Total energy + Delta-G solvation = -3037.700192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.39401 -39.85548 -35.74765 -33.54714 -32.61712 -32.57799 -31.50145 -28.62263 -27.00949 -25.77547 -23.67299 -22.93365 -21.40057 -20.91635 -18.06822 -17.95687 -17.25599 -16.67145 -15.97159 -15.63669 -15.15198 -14.46221 -14.28181 -14.12235 -13.78232 -13.28471 -12.94546 -12.86160 -12.61815 -12.24650 -12.06319 -11.89997 -11.62539 -11.30191 -11.21552 -11.12846 -11.02663 -10.97284 -10.79602 -10.15480 -10.03885 -9.58337 -9.14286 -8.79905 -7.16655 -6.41242 -4.18126 1.22447 2.14836 2.82973 3.03617 3.20988 3.22770 3.35904 3.44415 3.87766 4.10677 4.19221 4.34173 4.47802 4.56968 4.59853 4.80168 4.86695 4.97821 5.06577 5.16208 5.23711 5.41577 5.48563 5.54566 5.64090 5.72135 5.75124 5.76634 5.83647 6.01030 6.14033 6.51649 7.81693 8.31141 8.34286 9.02614 10.67622 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043913 B = 0.003762 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.477121 B = 7440.203751 C = 7788.147318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.145 4.145 6 C 0.173 3.827 7 H 0.103 0.897 8 C 0.165 3.835 9 N -0.366 5.366 10 O 0.084 5.916 11 C 0.221 3.779 12 C -0.012 4.012 13 S -0.164 6.164 14 C -0.512 4.512 15 H 0.096 0.904 16 C 0.098 3.902 17 N -0.873 5.873 18 Si 0.856 3.144 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.238 1.238 22 N -0.472 5.472 23 O -0.358 6.358 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.235 12.573 9.279 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.092 0.908 4 C -0.186 4.186 5 C -0.183 4.183 6 C 0.114 3.886 7 H 0.120 0.880 8 C -0.108 4.108 9 N -0.074 5.074 10 O 0.023 5.977 11 C 0.001 3.999 12 C -0.161 4.161 13 S 0.061 5.939 14 C -0.660 4.660 15 H 0.114 0.886 16 C -0.111 4.111 17 N -0.509 5.509 18 Si 0.681 3.319 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.162 1.162 22 N -0.207 5.207 23 O -0.277 6.277 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.949 12.471 10.539 22.825 hybrid contribution 0.675 -0.261 -0.590 0.934 sum -15.273 12.210 9.949 21.940 Atomic orbital electron populations 1.21801 0.92835 1.03242 1.02458 1.23063 0.95665 0.95414 0.84725 0.90824 1.23008 0.97439 0.99830 0.98282 1.22969 0.99287 1.02376 0.93707 1.20854 0.85619 0.91392 0.90764 0.87960 1.25206 0.87763 0.96551 1.01301 1.74607 1.18769 1.03846 1.10153 1.85335 1.22055 1.40710 1.49601 1.28207 0.87771 0.88395 0.95549 1.21715 0.92568 1.03033 0.98745 1.84631 1.33281 1.58628 1.17381 1.22082 1.12926 1.34370 0.96585 0.88579 1.24698 0.93985 0.94344 0.98113 1.69919 1.14478 1.32028 1.34465 0.86757 0.78805 0.81298 0.85059 1.19060 1.19649 1.16184 1.71857 1.19499 1.16659 1.12694 1.89248 1.25732 1.74497 1.38183 0.90949 0.91770 0.91567 0.90149 0.90003 0.90165 0.89269 0.87090 0.86311 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.52 37.16 0.35 -0.77 16 2 C 0.07 0.63 3.92 -25.95 -0.10 0.53 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -1.22 6.63 -25.16 -0.17 -1.38 16 5 C -0.14 -1.55 6.62 -25.16 -0.17 -1.72 16 6 C 0.17 2.29 3.85 -27.11 -0.10 2.18 16 7 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 8 C 0.17 2.78 7.05 -156.37 -1.10 1.67 16 9 N -0.37 -6.56 12.16 30.90 0.38 -6.19 16 10 O 0.08 1.51 11.31 18.10 0.20 1.71 16 11 C 0.22 4.00 7.77 -13.06 -0.10 3.90 16 12 C -0.01 -0.22 6.30 36.00 0.23 0.01 16 13 S -0.16 -3.81 19.39 -107.50 -2.08 -5.89 16 14 C -0.51 -13.85 10.04 30.94 0.31 -13.54 16 15 H 0.10 2.71 8.03 -52.49 -0.42 2.29 16 16 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 17 N -0.87 -25.25 13.97 55.49 0.78 -24.48 16 18 Si 0.86 20.51 27.74 -169.99 -4.72 15.80 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.24 -5.62 6.74 56.52 0.38 -5.23 16 22 N -0.47 -8.55 11.55 -9.87 -0.11 -8.66 16 23 O -0.36 -4.83 11.03 -35.23 -0.39 -5.22 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.64 7.87 -51.93 -0.41 0.24 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.11 1.85 8.14 -51.92 -0.42 1.42 16 32 H 0.12 2.09 8.14 -51.91 -0.42 1.67 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 300.65 15.07 4.53 4.53 Total: -1.00 -30.61 300.65 -6.56 -37.17 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.20 Total: -2.28 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.95 Total: -6.50 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 1.04 Total: -39.33 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.18 Total: -3.51 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.72 Total: 15.80 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.08 Total: -5.89 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.61 -6.56 -37.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398282062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.255 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds