Wall clock time and date at job start Mon Mar 30 2020 02:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99769 * 2 1 4 4 C 1.50694 * 109.46990 * 179.97438 * 3 2 1 5 5 N 1.31792 * 119.05183 * 269.97933 * 4 3 2 6 6 C 1.33028 * 120.92090 * 180.02562 * 5 4 3 7 7 O 1.35552 * 120.45800 * 179.97438 * 6 5 4 8 8 C 1.42905 * 117.00015 * 0.02562 * 7 6 5 9 9 C 1.38881 * 119.08171 * 359.97438 * 6 5 4 10 10 C 1.39318 * 118.27771 * 359.97438 * 9 6 5 11 11 S 1.76202 * 120.49646 * 180.27181 * 10 9 6 12 12 C 1.81009 * 99.99626 * 179.72259 * 11 10 9 13 13 C 1.50701 * 109.46850 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99752 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99806 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99988 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47040 * 89.99797 * 17 15 13 19 19 H 1.48503 * 109.47039 * 209.99792 * 17 15 13 20 20 H 1.48497 * 109.46874 * 329.99335 * 17 15 13 21 21 N 1.31705 * 119.05097 * 89.99968 * 4 3 2 22 22 H 1.09004 * 109.47436 * 60.00144 * 1 2 3 23 23 H 1.09005 * 109.46803 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47626 * 300.00092 * 1 2 3 25 25 H 1.08997 * 109.46692 * 59.99857 * 3 2 1 26 26 H 1.08997 * 109.46668 * 299.99967 * 3 2 1 27 27 H 1.09005 * 109.47336 * 59.99651 * 8 7 6 28 28 H 1.08998 * 109.47195 * 179.97438 * 8 7 6 29 29 H 1.08996 * 109.47404 * 300.00099 * 8 7 6 30 30 H 1.08001 * 120.85940 * 180.02562 * 9 6 5 31 31 H 1.09007 * 109.47032 * 300.00287 * 12 11 10 32 32 H 1.08998 * 109.46915 * 60.00636 * 12 11 10 33 33 H 0.97006 * 119.99333 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.1500 1.1367 1.1530 6 6 5.4754 1.0323 1.1970 7 8 6.1216 0.9822 2.3875 8 6 5.3160 1.0460 3.5661 9 6 6.1879 0.9752 0.0062 10 6 5.4777 1.0298 -1.1911 11 16 6.3221 0.9548 -2.7358 12 6 4.9143 1.0585 -3.8688 13 6 5.4097 1.0109 -5.2913 14 1 6.4676 0.9270 -5.4921 15 6 4.5126 1.0755 -6.3363 16 7 3.2244 1.1782 -6.0916 17 14 5.1268 1.0173 -8.0995 18 1 5.1798 -0.3939 -8.5588 19 1 4.2032 1.7872 -8.9710 20 1 6.4854 1.6124 -8.1703 21 7 4.1504 1.1359 -1.1504 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 4.6191 0.2080 3.5757 28 1 5.9562 0.9958 4.4469 29 1 4.7583 1.9824 3.5748 30 1 7.2645 0.8900 0.0084 31 1 4.2417 0.2194 -3.6904 32 1 4.3807 1.9940 -3.7007 33 1 2.5933 1.2233 -6.8269 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413479527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:02 Heat of formation + Delta-G solvation = -38.652879 kcal Electronic energy + Delta-G solvation = -17904.912215 eV Core-core repulsion = 14864.881713 eV Total energy + Delta-G solvation = -3040.030502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89803 -38.50294 -37.52796 -33.22647 -32.99733 -32.10112 -28.67635 -28.32086 -27.32914 -25.78125 -24.00577 -23.14359 -22.27856 -18.60631 -17.97067 -16.59813 -16.56974 -15.96236 -15.70135 -15.52528 -15.35696 -15.14827 -14.66736 -14.24805 -14.02039 -13.08370 -12.56703 -12.40838 -12.39776 -12.33371 -12.05651 -11.66764 -11.38353 -10.93182 -10.85636 -10.63585 -10.45802 -10.34226 -9.69651 -9.65167 -9.26571 -9.05982 -9.01693 -8.63183 -7.04267 -6.20493 -4.27824 1.03240 1.36861 2.08157 3.04174 3.24848 3.30468 3.31327 3.39617 3.53832 3.99541 4.32989 4.39265 4.62203 5.10077 5.16180 5.18243 5.21606 5.23533 5.35756 5.37410 5.45011 5.48847 5.61617 5.67848 5.72520 6.17477 6.97947 7.09481 7.13473 7.25025 7.27547 7.68756 7.94094 8.29203 8.73332 9.35709 10.89858 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.005169 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.282890 B = 5415.607253 C = 6762.521644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.136 3.864 4 C 0.368 3.632 5 N -0.580 5.580 6 C 0.366 3.634 7 O -0.303 6.303 8 C 0.039 3.961 9 C -0.236 4.236 10 C 0.192 3.808 11 S -0.069 6.069 12 C 0.074 3.926 13 C -0.527 4.527 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.883 5.883 17 Si 0.906 3.094 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.271 1.271 21 N -0.515 5.515 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.153 0.847 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 0.555 15.536 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C 0.058 3.942 4 C 0.095 3.905 5 N -0.314 5.314 6 C 0.180 3.820 7 O -0.208 6.208 8 C -0.056 4.056 9 C -0.267 4.267 10 C -0.062 4.062 11 S 0.174 5.826 12 C -0.073 4.073 13 C -0.567 4.567 14 H 0.085 0.915 15 C -0.134 4.134 16 N -0.520 5.520 17 Si 0.733 3.267 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 N -0.238 5.238 22 H 0.066 0.934 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.171 0.829 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.928 0.355 15.168 15.200 hybrid contribution -0.626 0.223 -0.396 0.773 sum -1.554 0.578 14.772 14.864 Atomic orbital electron populations 1.22763 0.80295 1.02975 1.00184 1.87930 1.20094 1.26328 1.95501 1.20938 0.85049 0.86003 1.02260 1.22265 0.96046 0.89578 0.82596 1.67782 1.08353 1.23485 1.31769 1.19728 0.87601 0.88597 0.86104 1.86232 1.35178 1.87100 1.12248 1.22886 0.95942 1.02640 0.84117 1.21392 1.02467 1.13447 0.89419 1.23911 0.92110 0.90883 0.99280 1.85763 1.18147 1.86015 0.92654 1.21320 0.90337 1.02415 0.93219 1.20677 0.93981 1.53460 0.88600 0.91540 1.24935 0.94659 0.94393 0.99459 1.69984 1.01229 1.48297 1.32494 0.86368 0.78825 0.78328 0.83226 1.20285 1.20910 1.19531 1.68792 1.07966 1.18168 1.28896 0.93422 0.89450 0.94059 0.90859 0.89917 0.92101 0.88581 0.92208 0.82948 0.92786 0.92907 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.16 10.69 -35.23 -0.38 -6.53 16 3 C 0.14 2.10 6.37 36.00 0.23 2.33 16 4 C 0.37 6.83 7.27 -157.28 -1.14 5.68 16 5 N -0.58 -10.04 9.27 -10.87 -0.10 -10.14 16 6 C 0.37 6.15 7.52 -16.80 -0.13 6.02 16 7 O -0.30 -4.31 10.49 -18.35 -0.19 -4.50 16 8 C 0.04 0.41 10.41 101.05 1.05 1.46 16 9 C -0.24 -4.13 9.89 -38.94 -0.39 -4.52 16 10 C 0.19 3.89 7.00 -16.55 -0.12 3.78 16 11 S -0.07 -1.48 22.01 -107.50 -2.37 -3.85 16 12 C 0.07 1.93 4.63 36.01 0.17 2.10 16 13 C -0.53 -14.56 9.13 -34.44 -0.31 -14.88 16 14 H 0.07 1.79 7.71 -52.49 -0.40 1.39 16 15 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 16 N -0.88 -25.49 13.29 55.43 0.74 -24.76 16 17 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 N -0.51 -10.89 9.20 -9.59 -0.09 -10.98 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.15 2.32 8.06 -52.49 -0.42 1.89 16 31 H 0.05 1.52 8.14 -51.91 -0.42 1.10 16 32 H 0.05 1.46 8.14 -51.92 -0.42 1.04 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -31.22 309.92 -6.55 -37.77 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -4.19 Total: -2.96 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 0.38 Total: 5.34 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.55 Total: -45.88 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.57 Total: -11.03 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.37 Total: -3.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.22 -6.55 -37.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413479527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.886 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds