Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99769 * 2 1 4 4 C 1.50694 * 109.46990 * 179.97438 * 3 2 1 5 5 N 1.31792 * 119.05183 * 269.97933 * 4 3 2 6 6 C 1.33028 * 120.92090 * 180.02562 * 5 4 3 7 7 O 1.35552 * 120.45800 * 179.97438 * 6 5 4 8 8 C 1.42905 * 117.00015 * 0.02562 * 7 6 5 9 9 C 1.38881 * 119.08171 * 359.97438 * 6 5 4 10 10 C 1.39318 * 118.27771 * 359.97438 * 9 6 5 11 11 S 1.76202 * 120.49646 * 180.27181 * 10 9 6 12 12 C 1.81009 * 99.99626 * 179.72259 * 11 10 9 13 13 C 1.50701 * 109.46850 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99752 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99806 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99988 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47040 * 89.99797 * 17 15 13 19 19 H 1.48503 * 109.47039 * 209.99792 * 17 15 13 20 20 H 1.48497 * 109.46874 * 329.99335 * 17 15 13 21 21 N 1.31705 * 119.05097 * 89.99968 * 4 3 2 22 22 H 1.09004 * 109.47436 * 60.00144 * 1 2 3 23 23 H 1.09005 * 109.46803 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47626 * 300.00092 * 1 2 3 25 25 H 1.08997 * 109.46692 * 59.99857 * 3 2 1 26 26 H 1.08997 * 109.46668 * 299.99967 * 3 2 1 27 27 H 1.09005 * 109.47336 * 59.99651 * 8 7 6 28 28 H 1.08998 * 109.47195 * 179.97438 * 8 7 6 29 29 H 1.08996 * 109.47404 * 300.00099 * 8 7 6 30 30 H 1.08001 * 120.85940 * 180.02562 * 9 6 5 31 31 H 1.09007 * 109.47032 * 300.00287 * 12 11 10 32 32 H 1.08998 * 109.46915 * 60.00636 * 12 11 10 33 33 H 0.97006 * 119.99333 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.1500 1.1367 1.1530 6 6 5.4754 1.0323 1.1970 7 8 6.1216 0.9822 2.3875 8 6 5.3160 1.0460 3.5661 9 6 6.1879 0.9752 0.0062 10 6 5.4777 1.0298 -1.1911 11 16 6.3221 0.9548 -2.7358 12 6 4.9143 1.0585 -3.8688 13 6 5.4097 1.0109 -5.2913 14 1 6.4676 0.9270 -5.4921 15 6 4.5126 1.0755 -6.3363 16 7 3.2244 1.1782 -6.0916 17 14 5.1268 1.0173 -8.0995 18 1 5.1798 -0.3939 -8.5588 19 1 4.2032 1.7872 -8.9710 20 1 6.4854 1.6124 -8.1703 21 7 4.1504 1.1359 -1.1504 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 4.6191 0.2080 3.5757 28 1 5.9562 0.9958 4.4469 29 1 4.7583 1.9824 3.5748 30 1 7.2645 0.8900 0.0084 31 1 4.2417 0.2194 -3.6904 32 1 4.3807 1.9940 -3.7007 33 1 2.5933 1.2233 -6.8269 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413479527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = -61.143747 kcal Electronic energy + Delta-G solvation = -17905.887492 eV Core-core repulsion = 14864.881713 eV Total energy + Delta-G solvation = -3041.005779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.28118 -39.69459 -38.69471 -35.31352 -34.45817 -33.44926 -30.73828 -29.50592 -28.37623 -26.85763 -25.67173 -24.80930 -23.76340 -19.90033 -19.39000 -18.58377 -17.77785 -17.35125 -17.07424 -16.70159 -16.59509 -16.51858 -16.37301 -15.47499 -15.40280 -14.81430 -14.39279 -14.32428 -13.84009 -13.33656 -12.98605 -12.83566 -12.70663 -12.65806 -12.45997 -12.44542 -11.96188 -11.75170 -11.61557 -11.23397 -10.78112 -10.73165 -10.54370 -10.35765 -8.75460 -8.31183 -6.47830 -0.41099 -0.06318 0.47911 1.42083 1.44043 1.47496 1.57876 1.86096 2.21325 2.37920 2.64648 3.03256 3.09648 3.35846 3.81010 3.98425 4.10363 4.29635 4.39422 4.39965 4.47242 4.51122 4.57663 4.66986 4.83433 4.88808 4.96005 5.07757 5.55427 5.61014 5.83050 5.99122 6.05518 6.60550 6.85553 7.21190 8.80566 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.005169 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.282890 B = 5415.607253 C = 6762.521644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.138 3.862 4 C 0.357 3.643 5 N -0.570 5.570 6 C 0.369 3.631 7 O -0.300 6.300 8 C 0.032 3.968 9 C -0.228 4.228 10 C 0.170 3.830 11 S -0.048 6.048 12 C 0.082 3.918 13 C -0.549 4.549 14 H 0.071 0.929 15 C 0.018 3.982 16 N -0.920 5.920 17 Si 0.978 3.022 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.261 1.261 21 N -0.552 5.552 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.063 0.937 30 H 0.177 0.823 31 H 0.020 0.980 32 H 0.024 0.976 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 0.588 16.806 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C 0.060 3.940 4 C 0.085 3.915 5 N -0.304 5.304 6 C 0.182 3.818 7 O -0.204 6.204 8 C -0.063 4.063 9 C -0.259 4.259 10 C -0.083 4.083 11 S 0.195 5.805 12 C -0.066 4.066 13 C -0.588 4.588 14 H 0.089 0.911 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.801 3.199 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.185 1.185 21 N -0.276 5.276 22 H 0.066 0.934 23 H 0.117 0.883 24 H 0.086 0.914 25 H 0.123 0.877 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.082 0.918 30 H 0.194 0.806 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.258 0.387 16.479 16.485 hybrid contribution -0.880 0.200 -0.521 1.042 sum -1.138 0.588 15.958 16.009 Atomic orbital electron populations 1.23008 0.77952 1.04273 1.01519 1.87875 1.22703 1.26734 1.95759 1.21031 0.83331 0.86174 1.03467 1.22845 0.97439 0.89047 0.82208 1.67890 1.08648 1.22907 1.30949 1.19889 0.87392 0.87418 0.87095 1.86259 1.35581 1.86361 1.12224 1.23255 0.96755 1.02743 0.83511 1.21562 1.03555 1.12107 0.88721 1.23858 0.92457 0.92665 0.99344 1.85298 1.15421 1.87377 0.92431 1.20847 0.91737 0.99398 0.94613 1.21044 0.94362 1.53762 0.89649 0.91114 1.25937 0.94701 0.93503 1.04221 1.70112 1.02604 1.48919 1.34096 0.85250 0.78636 0.78693 0.77306 1.19451 1.20186 1.18476 1.68750 1.08673 1.19485 1.30682 0.93389 0.88251 0.91365 0.87670 0.90558 0.92287 0.84775 0.91844 0.80592 0.96171 0.95785 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.21 10.69 -148.98 -1.59 -14.80 16 3 C 0.14 4.22 6.37 71.23 0.45 4.68 16 4 C 0.36 13.25 7.27 138.78 1.01 14.26 16 5 N -0.57 -19.02 9.27 -300.84 -2.79 -21.81 16 6 C 0.37 11.79 7.52 84.67 0.64 12.43 16 7 O -0.30 -7.71 10.49 -88.58 -0.93 -8.64 16 8 C 0.03 0.56 10.41 113.37 1.18 1.74 16 9 C -0.23 -7.76 9.89 22.68 0.22 -7.54 16 10 C 0.17 6.98 7.00 84.74 0.59 7.57 16 11 S -0.05 -2.10 22.01 -56.49 -1.24 -3.35 16 12 C 0.08 4.49 4.63 71.24 0.33 4.82 16 13 C -0.55 -31.09 9.13 25.60 0.23 -30.86 16 14 H 0.07 3.85 7.71 -2.91 -0.02 3.83 16 15 C 0.02 1.02 5.46 84.65 0.46 1.48 16 16 N -0.92 -54.57 13.29 21.45 0.28 -54.29 16 17 Si 0.98 43.09 29.54 68.60 2.03 45.12 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 N -0.55 -24.01 9.20 -184.26 -1.69 -25.71 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 1.09 8.12 -2.38 -0.02 1.07 16 28 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 30 H 0.18 5.00 8.06 -2.91 -0.02 4.97 16 31 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.02 1.41 8.14 -2.40 -0.02 1.39 16 33 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -68.96 309.92 1.54 -67.42 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.11 Total: 5.61 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.37 Total: 10.43 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -4.20 Total: -101.80 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -2.52 Total: -23.44 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -1.24 Total: -3.35 kcal Total: -68.96 1.54 -67.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413479527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.276 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds