Wall clock time and date at job start Mon Mar 30 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 S 1.81395 * 109.47280 * 2 1 4 4 C 1.81395 * 103.00014 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47297 * 179.97438 * 4 3 2 6 6 C 1.35311 * 126.66447 * 90.28654 * 5 4 3 7 7 C 1.42271 * 103.92043 * 180.13530 * 6 5 4 8 8 C 1.48334 * 126.93784 * 179.91390 * 7 6 5 9 9 O 1.21503 * 120.00080 * 359.70105 * 8 7 6 10 10 N 1.34777 * 120.00028 * 179.70657 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27546 * 10 8 7 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 H 1.07997 * 120.00357 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99860 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46949 * 60.00023 * 16 14 12 18 18 H 1.48499 * 109.47367 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47219 * 300.00256 * 16 14 12 20 20 N 1.30978 * 106.12479 * 359.64516 * 7 6 5 21 21 O 1.20908 * 111.43902 * 0.22643 * 20 7 6 22 22 H 1.08992 * 109.46890 * 59.99980 * 1 2 3 23 23 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46534 * 299.99845 * 1 2 3 25 25 H 1.08992 * 109.46682 * 239.99866 * 2 1 3 26 26 H 1.09000 * 109.46735 * 119.99750 * 2 1 3 27 27 H 1.09001 * 109.47082 * 59.99678 * 4 3 2 28 28 H 1.09003 * 109.47164 * 300.00070 * 4 3 2 29 29 H 1.07999 * 128.03814 * 0.02562 * 6 5 4 30 30 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 32 32 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 33 33 H 0.96999 * 120.00067 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 6 4.5965 2.8609 -0.0015 6 6 4.9554 3.5854 1.0835 7 6 5.5238 4.7676 0.5329 8 6 6.0850 5.9190 1.2811 9 8 6.0831 5.9130 2.4961 10 7 6.5967 6.9719 0.6131 11 6 7.1563 8.1063 1.3521 12 6 7.6639 9.1386 0.3786 13 1 7.5786 8.9667 -0.6842 14 6 8.2373 10.3027 0.8448 15 7 8.3417 10.5118 2.1390 16 14 8.8672 11.5820 -0.3618 17 1 7.7465 12.0511 -1.2157 18 1 9.4333 12.7326 0.3872 19 1 9.9219 10.9797 -1.2161 20 7 5.4569 4.6316 -0.7681 21 8 4.9457 3.5803 -1.0768 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 4.2399 0.9543 -0.8910 28 1 4.2407 0.9540 0.8890 29 1 4.8363 3.3270 2.1253 30 1 6.5984 6.9765 -0.3569 31 1 6.3825 8.5483 1.9798 32 1 7.9793 7.7617 1.9782 33 1 8.7454 11.3306 2.4670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427607686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:04 Heat of formation + Delta-G solvation = 13.054497 kcal Electronic energy + Delta-G solvation = -17238.214279 eV Core-core repulsion = 14200.425977 eV Total energy + Delta-G solvation = -3037.788302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.07346 -38.78675 -34.43274 -34.12245 -33.45153 -33.21659 -32.27347 -28.32055 -27.57558 -24.61150 -23.95911 -22.78358 -21.93952 -19.60793 -17.98509 -17.87251 -16.90218 -16.45067 -15.75835 -15.40977 -15.19581 -14.99732 -14.44427 -14.37830 -14.33612 -14.11589 -13.24384 -12.95460 -12.68527 -12.14968 -12.00427 -11.97124 -11.87619 -11.52389 -11.01646 -10.89371 -10.46502 -10.36113 -10.31622 -9.56106 -9.48633 -9.43915 -8.77556 -8.08597 -8.01021 -6.18410 -4.25607 0.66199 1.45469 1.87632 2.18028 2.78198 3.26440 3.30574 3.32407 3.61314 3.68597 4.06825 4.30675 4.45833 4.46720 4.50449 4.64149 4.93346 4.95310 5.00299 5.17832 5.25795 5.31893 5.34898 5.55706 5.65472 5.86290 7.19481 7.25875 7.43802 7.60635 7.91183 8.02449 8.49696 8.67585 8.91409 9.40355 10.91749 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049043 B = 0.002942 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.795522 B = 9513.991898 C = 9716.010004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 S -0.235 6.235 4 C -0.005 4.005 5 C -0.039 4.039 6 C -0.153 4.153 7 C -0.014 4.014 8 C 0.577 3.423 9 O -0.537 6.537 10 N -0.690 5.690 11 C 0.248 3.752 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 N -0.324 5.324 21 O 0.127 5.873 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.183 0.817 30 H 0.398 0.602 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 -22.592 -5.539 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.243 4.243 3 S -0.009 6.009 4 C -0.153 4.153 5 C -0.103 4.103 6 C -0.178 4.178 7 C -0.173 4.173 8 C 0.359 3.641 9 O -0.414 6.414 10 N -0.338 5.338 11 C 0.128 3.872 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.733 3.267 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.024 5.024 21 O 0.050 5.950 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.134 0.866 29 H 0.200 0.800 30 H 0.232 0.768 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.147 -20.666 -5.508 24.596 hybrid contribution 0.956 -0.683 -0.297 1.212 sum -11.191 -21.349 -5.805 24.793 Atomic orbital electron populations 1.21513 0.91966 1.02680 1.03481 1.23380 1.00505 0.95207 1.05167 1.87537 1.02660 1.12568 1.98113 1.21589 0.94145 0.91946 1.07658 1.23233 1.03933 0.96700 0.86447 1.22453 1.01447 0.92554 1.01311 1.23940 1.04486 0.99146 0.89751 1.16955 0.79448 0.81159 0.86553 1.90766 1.58245 1.79910 1.12437 1.46443 1.57719 1.18748 1.10887 1.19257 0.94107 0.81417 0.92398 1.21168 1.41324 1.02895 0.93008 0.91780 1.24945 0.95407 0.98085 0.95489 1.69961 1.43282 1.26603 1.12402 0.86429 0.79190 0.80429 0.80630 1.19984 1.21010 1.19999 1.74201 1.12234 0.99963 1.16045 1.84796 1.55665 1.21649 1.32902 0.91528 0.90913 0.91503 0.89804 0.89781 0.87381 0.86592 0.79994 0.76848 0.94946 0.94968 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.92 37.16 0.37 -0.32 16 2 C -0.09 -0.51 6.66 37.16 0.25 -0.26 16 3 S -0.24 -2.10 21.72 -107.50 -2.33 -4.43 16 4 C -0.01 -0.04 6.50 36.01 0.23 0.20 16 5 C -0.04 -0.46 6.73 -35.35 -0.24 -0.69 16 6 C -0.15 -2.14 10.92 -39.08 -0.43 -2.57 16 7 C -0.01 -0.24 7.19 -82.53 -0.59 -0.84 16 8 C 0.58 12.62 7.85 -12.11 -0.10 12.53 16 9 O -0.54 -13.23 16.95 5.36 0.09 -13.14 16 10 N -0.69 -15.81 5.55 -62.27 -0.35 -16.16 16 11 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 12 C -0.55 -15.18 9.28 -34.44 -0.32 -15.50 16 13 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 16 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 N -0.32 -5.40 11.84 33.29 0.39 -5.01 16 21 O 0.13 1.76 11.18 17.25 0.19 1.95 16 22 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.11 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.12 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.18 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.40 8.36 8.08 -40.82 -0.33 8.03 16 31 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -32.52 312.64 -6.61 -39.13 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.09 Total: 1.25 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.95 Total: 0.98 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.79 Total: -46.63 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.28 Total: -11.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.33 Total: -4.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.52 -6.61 -39.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.184 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds