Wall clock time and date at job start Mon Mar 30 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 S 1.81395 * 109.47280 * 2 1 4 4 C 1.81395 * 103.00014 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47297 * 179.97438 * 4 3 2 6 6 C 1.35311 * 126.66447 * 90.28654 * 5 4 3 7 7 C 1.42271 * 103.92043 * 180.13530 * 6 5 4 8 8 C 1.48334 * 126.93784 * 179.91390 * 7 6 5 9 9 O 1.21503 * 120.00080 * 359.70105 * 8 7 6 10 10 N 1.34777 * 120.00028 * 179.70657 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27546 * 10 8 7 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 H 1.07997 * 120.00357 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99860 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46949 * 60.00023 * 16 14 12 18 18 H 1.48499 * 109.47367 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47219 * 300.00256 * 16 14 12 20 20 N 1.30978 * 106.12479 * 359.64516 * 7 6 5 21 21 O 1.20908 * 111.43902 * 0.22643 * 20 7 6 22 22 H 1.08992 * 109.46890 * 59.99980 * 1 2 3 23 23 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46534 * 299.99845 * 1 2 3 25 25 H 1.08992 * 109.46682 * 239.99866 * 2 1 3 26 26 H 1.09000 * 109.46735 * 119.99750 * 2 1 3 27 27 H 1.09001 * 109.47082 * 59.99678 * 4 3 2 28 28 H 1.09003 * 109.47164 * 300.00070 * 4 3 2 29 29 H 1.07999 * 128.03814 * 0.02562 * 6 5 4 30 30 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 32 32 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 33 33 H 0.96999 * 120.00067 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 6 4.5965 2.8609 -0.0015 6 6 4.9554 3.5854 1.0835 7 6 5.5238 4.7676 0.5329 8 6 6.0850 5.9190 1.2811 9 8 6.0831 5.9130 2.4961 10 7 6.5967 6.9719 0.6131 11 6 7.1563 8.1063 1.3521 12 6 7.6639 9.1386 0.3786 13 1 7.5786 8.9667 -0.6842 14 6 8.2373 10.3027 0.8448 15 7 8.3417 10.5118 2.1390 16 14 8.8672 11.5820 -0.3618 17 1 7.7465 12.0511 -1.2157 18 1 9.4333 12.7326 0.3872 19 1 9.9219 10.9797 -1.2161 20 7 5.4569 4.6316 -0.7681 21 8 4.9457 3.5803 -1.0768 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 4.2399 0.9543 -0.8910 28 1 4.2407 0.9540 0.8890 29 1 4.8363 3.3270 2.1253 30 1 6.5984 6.9765 -0.3569 31 1 6.3825 8.5483 1.9798 32 1 7.9793 7.7617 1.9782 33 1 8.7454 11.3306 2.4670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427607686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:04 Heat of formation + Delta-G solvation = -9.273861 kcal Electronic energy + Delta-G solvation = -17239.182509 eV Core-core repulsion = 14200.425977 eV Total energy + Delta-G solvation = -3038.756532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.30914 -40.62065 -36.37388 -35.34645 -34.78060 -34.17722 -33.59787 -29.68463 -29.15775 -26.29882 -24.43949 -24.33272 -23.52897 -21.31147 -19.30329 -19.09783 -18.50898 -17.64037 -17.22115 -17.00275 -16.29534 -16.26298 -15.81161 -15.53431 -15.37794 -14.97907 -14.73563 -14.12170 -14.11439 -13.96477 -13.18617 -13.05002 -12.73337 -12.73006 -12.63789 -12.30165 -12.22125 -11.63968 -11.60263 -11.40732 -11.04425 -10.86696 -10.47338 -10.06250 -8.72705 -8.34386 -6.51719 -0.22083 0.19328 1.06511 1.40471 1.44839 1.53076 1.58702 1.78617 2.01063 2.02934 2.36799 2.84101 3.00209 3.33401 3.75175 3.94640 4.06006 4.12476 4.13902 4.34550 4.49294 4.60621 4.77609 4.93232 4.97286 4.97297 5.12569 5.27320 5.29321 5.51583 5.74394 6.49306 6.58123 6.90434 7.02702 7.22413 8.77489 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049043 B = 0.002942 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.795522 B = 9513.991898 C = 9716.010004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 S -0.303 6.303 4 C 0.005 3.995 5 C -0.012 4.012 6 C -0.161 4.161 7 C -0.044 4.044 8 C 0.579 3.421 9 O -0.571 6.571 10 N -0.691 5.691 11 C 0.265 3.735 12 C -0.564 4.564 13 H 0.079 0.921 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.986 3.014 17 H -0.264 1.264 18 H -0.280 1.280 19 H -0.263 1.263 20 N -0.337 5.337 21 O 0.145 5.855 22 H 0.057 0.943 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.137 0.863 28 H 0.146 0.854 29 H 0.197 0.803 30 H 0.408 0.592 31 H -0.001 1.001 32 H 0.000 1.000 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 -24.604 -7.448 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.224 4.224 3 S -0.077 6.077 4 C -0.142 4.142 5 C -0.076 4.076 6 C -0.186 4.186 7 C -0.201 4.201 8 C 0.364 3.636 9 O -0.450 6.450 10 N -0.340 5.340 11 C 0.143 3.857 12 C -0.601 4.601 13 H 0.097 0.903 14 C -0.192 4.192 15 N -0.564 5.564 16 Si 0.809 3.191 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.187 1.187 20 N -0.034 5.034 21 O 0.063 5.937 22 H 0.076 0.924 23 H 0.112 0.888 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.155 0.845 28 H 0.163 0.837 29 H 0.214 0.786 30 H 0.243 0.757 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.590 -22.682 -7.433 26.986 hybrid contribution 0.972 -0.238 0.296 1.044 sum -11.617 -22.921 -7.136 26.669 Atomic orbital electron populations 1.21549 0.91974 1.03676 1.02603 1.23446 1.00250 0.91949 1.06775 1.87830 1.04426 1.17084 1.98361 1.21819 0.92338 0.89476 1.10580 1.23841 1.01748 0.97344 0.84640 1.22626 1.01743 0.91491 1.02742 1.23399 1.07069 0.99096 0.90528 1.17398 0.78235 0.81614 0.86386 1.90729 1.59367 1.80815 1.14134 1.46202 1.58261 1.18374 1.11144 1.18745 0.92051 0.82654 0.92210 1.21516 1.41643 1.03317 0.93668 0.90338 1.26039 0.95221 1.00457 0.97491 1.70107 1.43993 1.27518 1.14759 0.85187 0.78884 0.77094 0.77956 1.18827 1.20534 1.18722 1.74195 1.12641 1.01167 1.15423 1.84764 1.54494 1.20901 1.33543 0.92371 0.88818 0.92498 0.88088 0.88187 0.84488 0.83654 0.78610 0.75671 0.98336 0.98200 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.92 71.99 0.71 -0.37 16 2 C -0.08 -0.57 6.66 71.99 0.48 -0.09 16 3 S -0.30 -4.71 21.72 -56.49 -1.23 -5.93 16 4 C 0.01 0.06 6.50 71.24 0.46 0.52 16 5 C -0.01 -0.24 6.73 25.01 0.17 -0.07 16 6 C -0.16 -4.33 10.92 22.60 0.25 -4.08 16 7 C -0.04 -1.56 7.19 42.96 0.31 -1.25 16 8 C 0.58 26.33 7.85 86.93 0.68 27.01 16 9 O -0.57 -29.52 16.95 -3.73 -0.06 -29.59 16 10 N -0.69 -32.95 5.55 -469.23 -2.60 -35.55 16 11 C 0.27 15.15 5.43 85.63 0.46 15.62 16 12 C -0.56 -31.96 9.28 25.60 0.24 -31.72 16 13 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 14 C 0.01 0.47 5.46 84.66 0.46 0.93 16 15 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 16 Si 0.99 43.30 29.54 68.60 2.03 45.33 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 20 N -0.34 -11.01 11.84 -49.52 -0.59 -11.60 16 21 O 0.14 3.73 11.18 71.91 0.80 4.54 16 22 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.20 4.59 8.06 -2.91 -0.02 4.56 16 30 H 0.41 17.56 8.08 -92.71 -0.75 16.81 16 31 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 32 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -73.48 312.64 3.24 -70.24 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.38 Total: 11.96 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 4.23 Total: 6.50 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -2.90 Total: -103.04 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.05 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.23 Total: -5.93 kcal Total: -73.48 3.24 -70.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.962 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds