Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.31461 * 126.26237 * 43.05334 * 3 2 1 5 5 N 1.39838 * 109.89815 * 180.02562 * 4 3 2 6 6 C 1.46496 * 125.33656 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47200 * 270.02564 * 6 5 4 8 8 O 1.21291 * 120.00249 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00081 * 179.97438 * 7 6 5 10 10 C 1.37100 * 120.00060 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99738 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00120 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00072 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00062 * 359.97438 * 12 10 9 15 15 H 1.48491 * 109.47163 * 90.00059 * 14 12 10 16 16 H 1.48504 * 109.47172 * 210.00398 * 14 12 10 17 17 H 1.48506 * 109.46976 * 330.00000 * 14 12 10 18 18 C 1.37218 * 109.33383 * 359.97438 * 5 4 3 19 19 C 1.39314 * 133.63248 * 179.97438 * 18 5 4 20 20 C 1.36620 * 119.85108 * 180.02562 * 19 18 5 21 21 C 1.38895 * 120.77274 * 0.02562 * 20 19 18 22 22 C 1.36582 * 120.56985 * 359.97040 * 21 20 19 23 23 C 1.39632 * 119.66827 * 0.30925 * 22 21 20 24 24 H 1.09001 * 109.46908 * 30.02426 * 6 5 4 25 25 H 1.09003 * 109.47212 * 150.01942 * 6 5 4 26 26 H 0.96999 * 120.00417 * 0.02562 * 9 7 6 27 27 H 0.97001 * 120.00054 * 179.97438 * 13 12 10 28 28 H 1.07994 * 120.07095 * 0.02834 * 19 18 5 29 29 H 1.07999 * 119.61300 * 180.02562 * 20 19 18 30 30 H 1.08001 * 119.71511 * 180.02562 * 21 20 19 31 31 H 1.08002 * 120.16141 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3459 -0.7736 -0.7236 5 7 4.6875 -0.4855 -0.4542 6 6 5.8374 -1.1489 -1.0736 7 6 6.2311 -2.3465 -0.2479 8 8 5.6123 -2.6188 0.7591 9 7 7.2709 -3.1150 -0.6284 10 6 7.6293 -4.2043 0.1230 11 1 7.0783 -4.4467 1.0196 12 6 8.7016 -4.9963 -0.2690 13 7 9.0449 -6.0406 0.4510 14 14 9.6543 -4.5774 -1.8203 15 1 10.7742 -3.6630 -1.4816 16 1 10.1963 -5.8232 -2.4199 17 1 8.7495 -3.9130 -2.7926 18 6 4.7581 0.5160 0.4811 19 6 5.8146 1.1793 1.1014 20 6 5.5579 2.1597 2.0176 21 6 4.2522 2.5058 2.3411 22 6 3.1981 1.8715 1.7478 23 6 3.4363 0.8622 0.8128 24 1 5.5715 -1.4728 -2.0798 25 1 6.6742 -0.4523 -1.1254 26 1 7.7660 -2.8971 -1.4335 27 1 9.7932 -6.5938 0.1771 28 1 6.8342 0.9190 0.8586 29 1 6.3798 2.6717 2.4958 30 1 4.0689 3.2837 3.0675 31 1 2.1855 2.1461 2.0040 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432487893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = 98.465193 kcal Electronic energy + Delta-G solvation = -19079.193794 eV Core-core repulsion = 15941.957978 eV Total energy + Delta-G solvation = -3137.235816 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45111 -38.56484 -37.35010 -36.60299 -34.28576 -33.41260 -31.86808 -30.55867 -30.02309 -27.94326 -24.91671 -23.64694 -22.61586 -21.85510 -19.65831 -18.65299 -18.35250 -17.17030 -16.56476 -16.03328 -15.31180 -15.13689 -14.80791 -14.60013 -14.21018 -13.87342 -13.59313 -13.31193 -13.24011 -13.04711 -12.80740 -12.33491 -12.20565 -11.91416 -11.81381 -11.30109 -11.20552 -10.96713 -10.73222 -10.22437 -10.08685 -9.75963 -8.89180 -8.79857 -8.37010 -7.92632 -6.45816 -3.99026 0.65947 1.35818 1.72388 1.96388 2.52942 2.90920 2.95322 3.05970 3.29088 3.41721 3.54867 3.78033 3.96618 4.26602 4.39332 4.64822 4.86654 4.92626 5.08418 5.17536 5.27320 5.31086 5.40488 5.55882 5.67831 5.81449 6.10541 6.30417 6.42680 6.65464 6.85823 7.25634 7.35575 7.38157 7.93468 8.38798 8.76812 9.22139 9.56046 10.66458 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.004721 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.876876 B = 5929.039226 C = 6523.582178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.305 3.695 3 C 0.141 3.859 4 N -0.173 5.173 5 N -0.352 5.352 6 C 0.120 3.880 7 C 0.424 3.576 8 O -0.559 6.559 9 N -0.577 5.577 10 C -0.309 4.309 11 H 0.121 0.879 12 C 0.046 3.954 13 N -0.873 5.873 14 Si 0.880 3.120 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.268 1.268 18 C 0.144 3.856 19 C -0.123 4.123 20 C -0.072 4.072 21 C -0.150 4.150 22 C -0.047 4.047 23 C -0.142 4.142 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.373 0.627 27 H 0.276 0.724 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 17.602 -2.694 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.012 4.012 3 C -0.035 4.035 4 N 0.007 4.993 5 N -0.140 5.140 6 C -0.005 4.005 7 C 0.208 3.792 8 O -0.441 6.441 9 N -0.216 5.216 10 C -0.438 4.438 11 H 0.138 0.862 12 C -0.159 4.159 13 N -0.512 5.512 14 Si 0.706 3.294 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.193 1.193 18 C 0.030 3.970 19 C -0.145 4.145 20 C -0.093 4.093 21 C -0.170 4.170 22 C -0.067 4.067 23 C -0.151 4.151 24 H 0.135 0.865 25 H 0.133 0.867 26 H 0.206 0.794 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.013 16.185 -2.931 17.195 hybrid contribution 1.468 0.410 -0.675 1.666 sum -3.546 16.594 -3.606 17.348 Atomic orbital electron populations 1.81268 1.10679 1.07450 1.07529 1.23582 0.89914 0.93859 0.93886 1.17795 0.86329 0.98908 1.00426 1.77036 0.87783 1.16098 1.18383 1.47700 1.02701 1.29125 1.34477 1.21593 0.85282 0.95714 0.97895 1.19835 0.84373 0.86363 0.88596 1.90645 1.54189 1.72347 1.26882 1.42124 1.28478 1.26279 1.24717 1.19426 1.14178 1.01745 1.08432 0.86161 1.25063 0.97052 0.95685 0.98065 1.69615 1.27854 1.15419 1.38278 0.86671 0.80742 0.79223 0.82778 1.19386 1.19942 1.19342 1.18695 0.95225 0.90921 0.92185 1.19939 0.97226 0.98125 0.99209 1.20735 0.97207 0.95703 0.95615 1.20675 0.92221 1.02012 1.02060 1.20256 0.99721 0.93157 0.93609 1.19281 0.90500 1.02112 1.03197 0.86536 0.86705 0.79435 0.91320 0.85154 0.85052 0.85395 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.93 18.54 41.84 0.78 -5.16 16 2 C 0.31 4.44 15.95 -22.48 -0.36 4.08 16 3 C 0.14 2.15 7.16 -82.61 -0.59 1.56 16 4 N -0.17 -2.95 12.46 33.52 0.42 -2.53 16 5 N -0.35 -5.71 3.14 -59.89 -0.19 -5.90 16 6 C 0.12 1.79 6.83 -5.20 -0.04 1.75 16 7 C 0.42 8.96 7.85 -10.99 -0.09 8.87 16 8 O -0.56 -14.64 16.01 5.55 0.09 -14.55 16 9 N -0.58 -12.65 5.09 -10.97 -0.06 -12.71 16 10 C -0.31 -8.32 10.16 -14.93 -0.15 -8.47 16 11 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 12 C 0.05 1.19 5.50 -17.47 -0.10 1.09 16 13 N -0.87 -24.51 13.96 55.50 0.77 -23.74 16 14 Si 0.88 18.05 27.74 -169.99 -4.71 13.33 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.27 -4.91 6.52 56.52 0.37 -4.54 16 18 C 0.14 2.14 6.86 -84.16 -0.58 1.57 16 19 C -0.12 -1.52 9.95 -39.77 -0.40 -1.92 16 20 C -0.07 -0.72 9.96 -39.92 -0.40 -1.12 16 21 C -0.15 -1.45 9.97 -39.94 -0.40 -1.85 16 22 C -0.05 -0.53 10.06 -39.66 -0.40 -0.93 16 23 C -0.14 -2.01 6.32 -105.00 -0.66 -2.67 16 24 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.12 1.23 8.12 -51.93 -0.42 0.81 16 26 H 0.37 6.89 5.76 -40.82 -0.24 6.66 16 27 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -33.37 294.17 -4.95 -38.31 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -2.33 Total: 6.55 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -4.15 Total: 1.97 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 1.72 Total: -50.04 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.09 Total: -14.55 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -4.71 Total: 13.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.37 -4.95 -38.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432487893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.778 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds