Wall clock time and date at job start Mon Mar 30 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47318 * 33.38975 * 3 2 1 5 5 C 1.36770 * 119.99957 * 274.98364 * 4 3 2 6 6 H 1.08001 * 120.00069 * 188.17976 * 5 4 3 7 7 C 1.39125 * 119.99828 * 8.18346 * 5 4 3 8 8 N 1.31309 * 120.00116 * 14.70891 * 7 5 4 9 9 Si 1.86802 * 119.99684 * 194.70890 * 7 5 4 10 10 H 1.48500 * 109.46633 * 90.00169 * 9 7 5 11 11 H 1.48500 * 109.46941 * 209.99598 * 9 7 5 12 12 H 1.48492 * 109.47075 * 330.00042 * 9 7 5 13 13 C 1.34769 * 120.00075 * 94.98689 * 4 3 2 14 14 O 1.21600 * 120.00235 * 184.96588 * 13 4 3 15 15 C 1.47771 * 120.00324 * 4.97028 * 13 4 3 16 16 C 1.39830 * 119.96413 * 130.12771 * 15 13 4 17 17 C 1.37554 * 120.14732 * 179.72424 * 16 15 13 18 18 C 1.39795 * 120.06323 * 0.55496 * 17 16 15 19 19 C 1.43198 * 120.04015 * 179.74083 * 18 17 16 20 20 N 7.47822 * 106.55261 * 135.87797 * 2 1 3 21 21 C 1.40208 * 119.92006 * 359.47183 * 18 17 16 22 22 O 1.35728 * 120.07370 * 180.27284 * 21 18 17 23 23 C 1.38399 * 119.85372 * 0.24976 * 21 18 17 24 24 H 4.40638 * 5.51343 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46930 * 273.38698 * 3 2 1 26 26 H 1.09001 * 109.46657 * 153.39257 * 3 2 1 27 27 H 0.97003 * 120.00526 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.92351 * 0.02566 * 16 15 13 29 29 H 1.08000 * 119.96765 * 180.27916 * 17 16 15 30 30 H 0.96703 * 114.00026 * 89.99718 * 22 21 18 31 31 H 1.08001 * 120.03153 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1523 -0.7601 5 6 3.2664 -2.3686 -0.1486 6 1 3.7486 -3.1843 -0.6668 7 6 2.7788 -2.5551 1.1411 8 7 1.9493 -1.6807 1.6622 9 14 3.3044 -4.0494 2.1312 10 1 4.5275 -3.7233 2.9077 11 1 2.2142 -4.4340 3.0633 12 1 3.5893 -5.1785 1.2098 13 6 3.4551 -1.0145 -2.0619 14 8 3.7743 -1.9887 -2.7160 15 6 3.4184 0.3204 -2.6946 16 6 4.5130 0.7707 -3.4391 17 6 4.4807 2.0103 -4.0344 18 6 3.3571 2.8289 -3.8869 19 6 3.3262 4.1216 -4.5022 20 7 3.3045 5.1458 -4.9905 21 6 2.2582 2.3804 -3.1405 22 8 1.1635 3.1704 -2.9999 23 6 2.2920 1.1302 -2.5478 24 1 -1.0498 -0.0002 -0.0003 25 1 3.0093 -0.0599 1.0259 26 1 3.0088 0.9197 -0.4603 27 1 1.6096 -1.8105 2.5615 28 1 5.3838 0.1417 -3.5511 29 1 5.3259 2.3534 -4.6126 30 1 0.4961 3.0439 -3.6882 31 1 1.4473 0.7820 -1.9719 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491023491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:37 Heat of formation + Delta-G solvation = 42.640029 kcal Electronic energy + Delta-G solvation = -19606.247025 eV Core-core repulsion = 16434.297697 eV Total energy + Delta-G solvation = -3171.949328 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49975 -40.08759 -37.78052 -37.44769 -37.09849 -34.14548 -33.15208 -32.37877 -30.98611 -28.36913 -27.17857 -25.19867 -23.72874 -21.58720 -20.23400 -19.80044 -19.04096 -18.31303 -18.04615 -17.16824 -16.75580 -16.04033 -15.95955 -15.72696 -15.45675 -14.98125 -14.72931 -14.40711 -14.25021 -14.04934 -13.92836 -13.46545 -13.37958 -13.00064 -12.75752 -12.67415 -12.43461 -12.13682 -11.90043 -11.32129 -11.01569 -10.58848 -10.49444 -10.02439 -9.92477 -9.76978 -8.30353 -5.93272 -0.56723 0.18850 1.34872 1.45239 1.55617 1.57574 1.63502 2.05025 2.10399 2.34833 2.42195 2.65532 2.74456 2.98966 3.03208 3.23951 3.77879 3.90292 4.00670 4.16417 4.27440 4.52998 4.63156 4.82286 4.96794 5.08483 5.12361 5.36040 5.43634 5.47234 5.56957 5.96460 6.38540 6.39158 6.68969 7.07415 7.18419 7.33625 7.88068 8.60271 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.005532 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.612012 B = 5060.314887 C = 5728.425207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.134 4.134 3 C 0.229 3.771 4 N -0.432 5.432 5 C -0.346 4.346 6 H 0.084 0.916 7 C 0.004 3.996 8 N -0.867 5.867 9 Si 0.991 3.009 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.276 1.276 13 C 0.460 3.540 14 O -0.624 6.624 15 C -0.062 4.062 16 C -0.092 4.092 17 C -0.033 4.033 18 C -0.055 4.055 19 C 0.288 3.712 20 N -0.450 5.450 21 C 0.167 3.833 22 O -0.497 6.497 23 C -0.138 4.138 24 H 0.231 0.769 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.275 0.725 28 H 0.147 0.853 29 H 0.178 0.822 30 H 0.416 0.584 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 7.584 -4.612 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.136 4.136 3 C 0.107 3.893 4 N -0.147 5.147 5 C -0.474 4.474 6 H 0.102 0.898 7 C -0.199 4.199 8 N -0.504 5.504 9 Si 0.815 3.185 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.251 3.749 14 O -0.513 6.513 15 C -0.066 4.066 16 C -0.111 4.111 17 C -0.053 4.053 18 C -0.060 4.060 19 C -0.027 4.027 20 N -0.126 5.126 21 C 0.119 3.881 22 O -0.311 6.311 23 C -0.157 4.157 24 H 0.248 0.752 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.195 0.805 30 H 0.277 0.723 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.583 8.924 -4.950 10.221 hybrid contribution -0.585 -1.599 0.592 1.803 sum -0.002 7.324 -4.358 8.523 Atomic orbital electron populations 1.25059 0.96254 1.02386 1.03422 1.23037 0.94577 0.98315 0.97646 1.18602 0.85106 0.87178 0.98411 1.43857 1.53441 1.09507 1.07894 1.19743 1.38444 0.90644 0.98544 0.89761 1.26030 0.94528 1.01727 0.97648 1.70082 1.26944 1.36600 1.16754 0.84952 0.78246 0.77612 0.77671 1.19060 1.20142 1.20114 1.18543 0.85424 0.89045 0.81906 1.90605 1.56396 1.41323 1.62927 1.20091 0.95755 0.92931 0.97826 1.21220 0.97774 0.96230 0.95864 1.21241 0.96583 0.91179 0.96300 1.16446 0.97949 0.89098 1.02475 1.25300 0.92771 0.92243 0.92373 1.81196 1.08549 1.11972 1.10911 1.18029 0.87718 0.88286 0.94018 1.84734 1.29684 1.61349 1.55327 1.21805 0.99450 0.92987 1.01440 0.75221 0.88058 0.89368 0.91395 0.83484 0.80483 0.72310 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.62 19.05 74.32 1.42 -8.21 16 2 C -0.13 -5.67 8.70 31.12 0.27 -5.40 16 3 C 0.23 9.83 4.76 84.57 0.40 10.23 16 4 N -0.43 -21.13 2.59 -648.81 -1.68 -22.81 16 5 C -0.35 -18.53 9.46 84.14 0.80 -17.73 16 6 H 0.08 4.84 7.25 -2.91 -0.02 4.82 16 7 C 0.00 0.22 5.17 84.98 0.44 0.66 16 8 N -0.87 -42.22 8.37 21.69 0.18 -42.04 16 9 Si 0.99 40.00 29.58 68.60 2.03 42.03 16 10 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 11 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.46 21.58 7.16 86.77 0.62 22.20 16 14 O -0.62 -33.92 16.64 -4.03 -0.07 -33.99 16 15 C -0.06 -2.16 4.90 -20.07 -0.10 -2.26 16 16 C -0.09 -2.47 9.70 22.49 0.22 -2.26 16 17 C -0.03 -0.66 9.73 22.48 0.22 -0.44 16 18 C -0.06 -1.23 5.75 -21.18 -0.12 -1.35 16 19 C 0.29 6.80 14.85 88.34 1.31 8.11 16 20 N -0.45 -12.28 18.53 18.99 0.35 -11.93 16 21 C 0.17 4.18 6.70 22.79 0.15 4.33 16 22 O -0.50 -11.00 12.92 -90.51 -1.17 -12.17 16 23 C -0.14 -4.27 7.49 22.61 0.17 -4.10 16 24 H 0.23 6.80 7.80 -4.43 -0.03 6.76 16 25 H 0.10 4.65 6.29 -2.39 -0.01 4.63 16 26 H 0.09 3.28 5.53 -2.39 -0.01 3.26 16 27 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.42 5.22 9.06 -74.06 -0.67 4.55 16 31 H 0.14 4.74 4.71 -2.91 -0.01 4.73 16 Total: -1.00 -66.77 288.43 5.98 -60.80 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.54 Total: 16.33 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 5.80 Total: 3.78 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.15 Total: -76.78 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.24 Total: -46.16 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -66.77 5.98 -60.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.436 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds