Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21637 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.47123 * 120.00370 * 180.02562 * 14 13 3 17 17 C 1.38037 * 127.75817 * 179.70337 * 16 14 13 18 18 C 1.37568 * 114.24884 * 179.79870 * 17 16 14 19 19 O 1.35955 * 120.83051 * 180.23932 * 18 17 16 20 20 C 1.42900 * 117.00144 * 180.27270 * 19 18 17 21 21 N 1.30365 * 118.34308 * 0.52838 * 18 17 16 22 22 S 1.69677 * 107.63809 * 359.71215 * 21 18 17 23 23 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 25 25 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 26 26 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 30 30 H 1.08002 * 122.87569 * 359.96471 * 17 16 14 31 31 H 1.08992 * 109.47262 * 60.00200 * 20 19 18 32 32 H 1.09003 * 109.46851 * 180.02562 * 20 19 18 33 33 H 1.08999 * 109.47046 * 300.00002 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3417 2.6320 -0.4317 16 6 0.0460 3.3217 -2.6243 17 6 -1.1512 3.9431 -2.9177 18 6 -1.2170 4.4727 -4.1857 19 8 -2.3338 5.1191 -4.6137 20 6 -2.3156 5.6319 -5.9474 21 7 -0.1838 4.3343 -4.9686 22 16 1.0058 3.4869 -4.1050 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8288 -0.0530 2.9544 29 1 2.2721 2.1230 -1.9977 30 1 -1.9655 4.0102 -2.2114 31 1 -2.1644 4.8123 -6.6498 32 1 -3.2650 6.1231 -6.1607 33 1 -1.5036 6.3518 -6.0488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521396297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -31.677690 kcal Electronic energy + Delta-G solvation = -18214.531756 eV Core-core repulsion = 15174.803721 eV Total energy + Delta-G solvation = -3039.728035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23822 -39.13916 -36.51746 -35.15615 -32.58083 -31.53373 -30.66821 -28.21594 -27.15845 -24.78567 -23.05204 -21.64617 -19.81914 -19.63448 -18.52847 -17.78156 -16.70471 -16.33956 -15.56922 -15.51377 -14.78900 -14.72495 -14.50594 -13.62788 -13.46152 -13.21100 -12.74712 -12.24997 -12.16097 -11.63776 -11.44837 -11.30825 -11.21977 -11.03665 -10.88012 -10.85570 -10.40590 -10.26948 -9.75549 -9.60688 -9.45248 -9.14603 -8.57660 -8.43370 -8.02701 -6.18323 -4.28501 0.22801 1.19267 1.53587 2.25439 2.93779 3.23455 3.29041 3.30035 3.54220 3.82692 4.31325 4.69876 4.95140 5.03828 5.13448 5.23082 5.29631 5.39533 5.73794 6.01488 6.33049 6.38693 6.57605 6.91033 6.96267 7.09701 7.17986 7.29159 7.51506 7.62215 7.79550 8.08245 8.42525 8.62873 8.86056 9.38453 10.87034 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.004515 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.175125 B = 6200.332202 C = 6760.129886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.691 5.691 14 C 0.574 3.426 15 O -0.520 6.520 16 C -0.157 4.157 17 C -0.146 4.146 18 C 0.306 3.694 19 O -0.296 6.296 20 C 0.037 3.963 21 N -0.521 5.521 22 S 0.280 5.720 23 H 0.026 0.974 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.102 0.898 28 H 0.266 0.734 29 H 0.389 0.611 30 H 0.177 0.823 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 6.138 -12.887 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.339 5.339 14 C 0.355 3.645 15 O -0.398 6.398 16 C -0.289 4.289 17 C -0.183 4.183 18 C 0.093 3.907 19 O -0.202 6.202 20 C -0.058 4.058 21 N -0.362 5.362 22 S 0.428 5.572 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.194 0.806 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.010 6.012 -13.418 15.884 hybrid contribution -0.033 0.232 0.521 0.572 sum -6.043 6.244 -12.896 15.551 Atomic orbital electron populations 1.21866 0.98280 0.98387 1.01206 1.21963 0.92666 0.99466 1.02652 1.18943 0.94627 0.89337 0.80141 0.92739 1.21160 0.90366 1.39738 1.06449 0.91923 1.24870 0.98755 0.94614 0.95250 1.69877 1.35360 1.37324 1.09225 0.86485 0.84589 0.78406 0.77518 1.20104 1.21097 1.20067 1.46491 1.13506 1.54787 1.19104 1.16726 0.83639 0.79603 0.84494 1.90830 1.51357 1.59380 1.38262 1.26546 0.98237 1.03489 1.00670 1.20740 1.00009 1.01919 0.95652 1.19927 0.86640 0.93542 0.90615 1.86303 1.32090 1.68805 1.33018 1.22952 1.03322 0.99035 0.80532 1.76389 1.05492 1.26267 1.28098 1.85006 1.20107 1.51721 1.00318 0.95531 0.92963 0.94435 0.94737 0.87949 0.92369 0.77790 0.80620 0.92196 0.88150 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.52 2.24 -69.09 -0.15 6.36 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -23.86 11.30 55.43 0.63 -23.23 16 9 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.69 -13.86 5.02 -56.11 -0.28 -14.14 16 14 C 0.57 11.14 6.37 -12.66 -0.08 11.06 16 15 O -0.52 -11.62 14.08 5.25 0.07 -11.55 16 16 C -0.16 -2.50 6.74 -36.05 -0.24 -2.74 16 17 C -0.15 -2.14 10.09 -39.90 -0.40 -2.55 16 18 C 0.31 4.26 7.36 -18.42 -0.14 4.12 16 19 O -0.30 -3.65 10.51 -19.60 -0.21 -3.86 16 20 C 0.04 0.32 10.43 101.05 1.05 1.38 16 21 N -0.52 -7.32 11.03 29.19 0.32 -7.00 16 22 S 0.28 3.82 23.27 -107.50 -2.50 1.31 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 25 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 29 H 0.39 6.86 7.90 -40.82 -0.32 6.54 16 30 H 0.18 2.42 8.06 -52.49 -0.42 1.99 16 31 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -28.50 297.00 -6.50 -35.00 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.80 Total: 4.48 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.19 Total: -0.51 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.67 Total: -44.37 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.13 Total: -15.40 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.50 Total: 1.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.50 -6.50 -35.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521396297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.325 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds