Wall clock time and date at job start Mon Mar 30 2020 01:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21637 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.47123 * 120.00370 * 180.02562 * 14 13 3 17 17 C 1.38037 * 127.75817 * 179.70337 * 16 14 13 18 18 C 1.37568 * 114.24884 * 179.79870 * 17 16 14 19 19 O 1.35955 * 120.83051 * 180.23932 * 18 17 16 20 20 C 1.42900 * 117.00144 * 180.27270 * 19 18 17 21 21 N 1.30365 * 118.34308 * 0.52838 * 18 17 16 22 22 S 1.69677 * 107.63809 * 359.71215 * 21 18 17 23 23 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 25 25 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 26 26 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 30 30 H 1.08002 * 122.87569 * 359.96471 * 17 16 14 31 31 H 1.08992 * 109.47262 * 60.00200 * 20 19 18 32 32 H 1.09003 * 109.46851 * 180.02562 * 20 19 18 33 33 H 1.08999 * 109.47046 * 300.00002 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3417 2.6320 -0.4317 16 6 0.0460 3.3217 -2.6243 17 6 -1.1512 3.9431 -2.9177 18 6 -1.2170 4.4727 -4.1857 19 8 -2.3338 5.1191 -4.6137 20 6 -2.3156 5.6319 -5.9474 21 7 -0.1838 4.3343 -4.9686 22 16 1.0058 3.4869 -4.1050 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8288 -0.0530 2.9544 29 1 2.2721 2.1230 -1.9977 30 1 -1.9655 4.0102 -2.2114 31 1 -2.1644 4.8123 -6.6498 32 1 -3.2650 6.1231 -6.1607 33 1 -1.5036 6.3518 -6.0488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521396297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:30 Heat of formation + Delta-G solvation = -52.333722 kcal Electronic energy + Delta-G solvation = -18215.427469 eV Core-core repulsion = 15174.803721 eV Total energy + Delta-G solvation = -3040.623748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34042 -40.67184 -37.64063 -36.89682 -34.40833 -33.14823 -32.10126 -29.33868 -28.73003 -26.13063 -24.78741 -22.99140 -21.48570 -21.14319 -19.86870 -18.89817 -18.28776 -17.32939 -17.26650 -17.00022 -16.37541 -16.27578 -15.69251 -15.15896 -14.59802 -14.53882 -14.42568 -13.89020 -13.50548 -13.15966 -13.03993 -12.88727 -12.64082 -12.51452 -12.19267 -12.12352 -12.06571 -11.96952 -11.58317 -11.12510 -11.04967 -10.85271 -10.52607 -9.79078 -9.47810 -8.15148 -6.32451 -0.99013 0.04125 0.42915 1.10592 1.48618 1.49697 1.57291 1.85398 2.04418 2.37039 2.54912 3.15062 3.52286 3.88502 4.14036 4.31879 4.37021 4.51126 4.57832 4.58410 4.72802 4.75819 4.97383 5.06916 5.26883 5.41557 5.44261 5.59550 5.76656 5.86103 5.95374 6.15168 6.69995 6.76218 7.20271 7.40893 8.90033 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.004515 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.175125 B = 6200.332202 C = 6760.129886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.073 0.927 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.690 5.690 14 C 0.578 3.422 15 O -0.556 6.556 16 C -0.184 4.184 17 C -0.134 4.134 18 C 0.305 3.695 19 O -0.302 6.302 20 C 0.030 3.970 21 N -0.522 5.522 22 S 0.322 5.678 23 H 0.048 0.952 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.181 0.819 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 6.684 -14.965 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.091 0.909 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.338 5.338 14 C 0.362 3.638 15 O -0.436 6.436 16 C -0.316 4.316 17 C -0.172 4.172 18 C 0.092 3.908 19 O -0.208 6.208 20 C -0.064 4.064 21 N -0.364 5.364 22 S 0.471 5.529 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.198 0.802 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.654 6.573 -15.547 17.801 hybrid contribution -0.221 0.141 1.073 1.105 sum -5.875 6.714 -14.474 17.002 Atomic orbital electron populations 1.21718 0.96913 0.99498 1.00356 1.21819 0.93819 0.98787 1.01747 1.18544 0.94043 0.89411 0.80446 0.97249 1.21520 0.91144 1.39555 1.06828 0.90861 1.25705 1.03148 0.94250 0.94940 1.70025 1.37126 1.38121 1.09715 0.85453 0.79233 0.78459 0.77544 1.19695 1.21277 1.18923 1.46205 1.14316 1.54996 1.18304 1.16994 0.82752 0.78786 0.85258 1.90809 1.52190 1.60562 1.40029 1.25997 0.99865 1.05228 1.00481 1.20857 0.99579 1.00703 0.96090 1.19841 0.87083 0.93618 0.90247 1.86316 1.31215 1.68458 1.34831 1.23261 1.05221 0.99155 0.78810 1.76369 1.05709 1.26155 1.28207 1.84851 1.19012 1.50832 0.98198 0.93326 0.95067 0.93971 0.93759 0.90524 0.92489 0.76264 0.80178 0.92053 0.84994 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.65 16 3 C 0.28 13.69 2.24 44.25 0.10 13.79 16 4 H 0.01 0.56 7.58 -2.39 -0.02 0.54 16 5 C -0.55 -28.14 8.73 25.60 0.22 -27.92 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 1.05 5.30 84.66 0.45 1.50 16 8 N -0.91 -50.45 11.30 21.45 0.24 -50.21 16 9 Si 0.97 40.79 29.54 68.60 2.03 42.82 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 13 N -0.69 -27.68 5.02 -449.69 -2.26 -29.94 16 14 C 0.58 22.53 6.37 86.58 0.55 23.08 16 15 O -0.56 -25.41 14.08 -4.15 -0.06 -25.47 16 16 C -0.18 -5.67 6.74 24.56 0.17 -5.51 16 17 C -0.13 -3.77 10.09 22.06 0.22 -3.54 16 18 C 0.31 7.89 7.36 84.75 0.62 8.51 16 19 O -0.30 -6.77 10.51 -93.04 -0.98 -7.75 16 20 C 0.03 0.45 10.43 113.37 1.18 1.63 16 21 N -0.52 -13.45 11.03 -175.20 -1.93 -15.39 16 22 S 0.32 8.12 23.27 -56.49 -1.31 6.81 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.03 1.44 7.84 -2.39 -0.02 1.43 16 25 H 0.04 1.76 5.64 -2.39 -0.01 1.74 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 4.06 5.96 -2.39 -0.01 4.05 16 28 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 29 H 0.40 13.85 7.90 -92.71 -0.73 13.12 16 30 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 Total: -1.00 -61.35 297.00 0.44 -60.91 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.41 Total: 17.22 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.30 Total: 0.99 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -3.95 Total: -95.53 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.04 Total: -33.22 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.31 Total: 6.81 kcal Total: -61.35 0.44 -60.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521396297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.577 kcal (2) G-P(sol) polarization free energy of solvation -61.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds