Wall clock time and date at job start Mon Mar 30 2020 01:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46780 * 2 1 4 4 N 1.46501 * 109.46993 * 119.99686 * 2 1 3 5 5 C 1.46498 * 120.00263 * 304.72560 * 4 2 1 6 6 C 1.50699 * 109.47095 * 263.02754 * 5 4 2 7 7 H 1.08004 * 119.99432 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00362 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99735 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00450 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46945 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46876 * 119.99722 * 10 8 6 13 13 H 1.48489 * 109.47495 * 240.00055 * 10 8 6 14 14 C 1.34776 * 119.99354 * 124.72078 * 4 2 1 15 15 O 1.21649 * 120.00696 * 3.78050 * 14 4 2 16 16 C 1.47190 * 119.99762 * 183.77367 * 14 4 2 17 17 C 1.35088 * 122.48652 * 173.60122 * 16 14 4 18 18 S 1.76190 * 108.21864 * 180.02562 * 17 16 14 19 19 C 1.76063 * 90.15788 * 0.02562 * 18 17 16 20 20 O 1.35493 * 125.17696 * 179.97438 * 19 18 17 21 21 N 1.29250 * 109.63545 * 0.02562 * 19 18 17 22 22 H 1.09004 * 109.46695 * 299.99849 * 1 2 3 23 23 H 1.09002 * 109.47060 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.46807 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46760 * 239.99939 * 2 1 3 26 26 H 1.08999 * 109.46684 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47108 * 299.99523 * 3 2 1 28 28 H 1.08995 * 109.47524 * 60.00406 * 3 2 1 29 29 H 1.09001 * 109.47075 * 23.02940 * 5 4 2 30 30 H 1.09002 * 109.46845 * 143.02605 * 5 4 2 31 31 H 0.97006 * 120.00069 * 179.97438 * 9 8 6 32 32 H 1.08001 * 125.89279 * 0.03082 * 17 16 14 33 33 H 0.96701 * 114.00489 * 0.03416 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5812 -0.2532 2.5243 6 6 2.6202 0.6620 3.1191 7 1 3.5168 0.8943 2.5634 8 6 2.4268 1.2020 4.3728 9 7 1.3353 0.9187 5.0495 10 14 3.7151 2.3359 5.1104 11 1 4.8405 2.4945 4.1546 12 1 3.1078 3.6632 5.3839 13 1 4.2207 1.7521 6.3786 14 6 2.8698 -1.7282 1.0748 15 8 3.2867 -2.0479 -0.0224 16 6 3.2954 -2.4747 2.2698 17 6 4.0438 -3.5969 2.1960 18 16 4.3316 -4.1759 3.8350 19 6 3.3996 -2.8286 4.4798 20 8 3.1685 -2.5978 5.7948 21 7 2.9685 -2.0939 3.5077 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.6343 0.2796 2.4379 30 1 1.4513 -1.1228 3.1686 31 1 1.1994 1.2983 5.9318 32 1 4.4037 -4.0594 1.2888 33 1 3.5678 -3.2514 6.3850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526886487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:34 Heat of formation + Delta-G solvation = -5.647346 kcal Electronic energy + Delta-G solvation = -19376.717039 eV Core-core repulsion = 16338.117765 eV Total energy + Delta-G solvation = -3038.599275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97543 -38.44750 -36.92356 -35.75319 -32.72313 -31.21446 -29.49337 -27.00091 -26.61136 -25.04124 -22.89250 -22.17711 -19.75667 -19.68989 -17.85878 -17.11609 -16.39120 -15.56073 -15.46355 -15.08086 -14.91077 -14.29012 -14.09409 -13.54530 -12.98433 -12.57648 -12.43060 -12.20930 -11.91401 -11.83594 -11.57137 -11.43549 -11.29967 -10.86476 -10.74209 -10.65273 -10.28782 -9.84120 -9.48721 -9.37546 -9.11227 -8.64362 -8.22469 -8.12868 -7.54628 -5.90486 -3.88812 0.97452 1.26049 1.74276 2.70345 3.33007 3.35856 3.41245 3.45570 3.99349 4.04876 4.53728 5.23265 5.46041 5.47954 5.55491 5.70920 5.72521 5.87810 6.14428 6.21225 6.23010 6.41184 6.46946 6.76948 6.93689 7.02547 7.06702 7.62281 7.82944 8.00927 8.19829 8.39026 8.40359 8.92932 9.12479 9.71058 11.18152 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.011189 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.602123 B = 2501.802356 C = 4074.720246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 C -0.153 4.153 4 N -0.569 5.569 5 C 0.225 3.775 6 C -0.498 4.498 7 H 0.050 0.950 8 C 0.071 3.929 9 N -0.886 5.886 10 Si 0.882 3.118 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.586 3.414 15 O -0.572 6.572 16 C 0.066 3.934 17 C -0.192 4.192 18 S -0.026 6.026 19 C 0.290 3.710 20 O -0.407 6.407 21 N -0.393 5.393 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.257 0.743 32 H 0.186 0.814 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -8.118 -1.834 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 C -0.211 4.211 4 N -0.297 5.297 5 C 0.106 3.894 6 C -0.537 4.537 7 H 0.068 0.932 8 C -0.131 4.131 9 N -0.526 5.526 10 Si 0.711 3.289 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.212 1.212 14 C 0.370 3.630 15 O -0.454 6.454 16 C -0.065 4.065 17 C -0.333 4.333 18 S 0.219 5.781 19 C -0.031 4.031 20 O -0.204 6.204 21 N -0.120 5.120 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.203 0.797 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.046 -8.073 -1.729 8.506 hybrid contribution 0.893 0.725 0.431 1.228 sum 2.938 -7.348 -1.298 8.019 Atomic orbital electron populations 1.22134 0.95411 1.01764 1.02331 1.20935 0.93677 0.93588 0.88764 1.22070 1.01347 0.95712 1.01972 1.48316 1.42815 1.28731 1.09881 1.20058 0.95247 0.97719 0.76368 1.21224 1.04722 1.26717 1.01070 0.93154 1.24714 0.95185 0.96530 0.96628 1.69920 1.25745 1.44371 1.12535 0.86705 0.82246 0.80743 0.79247 1.20146 1.21279 1.21222 1.17084 0.79470 0.80496 0.85902 1.90706 1.58218 1.70125 1.26341 1.20232 1.00136 0.95022 0.91071 1.26554 1.06775 1.01011 0.98950 1.85043 1.56945 1.33343 1.02727 1.26072 0.96058 0.91543 0.89449 1.84921 1.73173 1.52057 1.10254 1.67140 1.22630 1.25212 0.97043 0.91316 0.92224 0.92958 0.89600 0.92874 0.93137 0.90578 0.95190 0.90322 0.93280 0.79715 0.74159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.10 37.16 0.34 -2.28 16 2 C 0.13 2.55 3.24 -67.93 -0.22 2.33 16 3 C -0.15 -2.80 8.93 37.16 0.33 -2.47 16 4 N -0.57 -12.61 2.38 -168.81 -0.40 -13.01 16 5 C 0.23 5.58 4.11 -5.20 -0.02 5.56 16 6 C -0.50 -13.36 7.24 -34.44 -0.25 -13.61 16 7 H 0.05 1.41 7.81 -52.48 -0.41 1.00 16 8 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 9 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 10 Si 0.88 21.65 29.54 -169.99 -5.02 16.62 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.59 13.06 7.57 -12.63 -0.10 12.97 16 15 O -0.57 -13.11 16.03 5.23 0.08 -13.03 16 16 C 0.07 1.37 6.47 -84.60 -0.55 0.82 16 17 C -0.19 -3.24 10.84 29.61 0.32 -2.92 16 18 S -0.03 -0.36 23.38 -107.50 -2.51 -2.88 16 19 C 0.29 5.21 8.91 51.68 0.46 5.67 16 20 O -0.41 -6.62 13.64 -18.17 -0.25 -6.87 16 21 N -0.39 -8.58 5.71 -11.34 -0.06 -8.64 16 22 H 0.07 1.22 6.50 -51.93 -0.34 0.89 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.63 6.93 -51.93 -0.36 1.27 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.54 7.31 -51.93 -0.38 1.16 16 29 H 0.03 0.78 6.20 -51.93 -0.32 0.46 16 30 H 0.08 2.09 5.24 -51.93 -0.27 1.82 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.19 2.76 8.02 -52.49 -0.42 2.34 16 33 H 0.41 3.57 9.03 45.56 0.41 3.99 16 LS Contribution 295.05 15.07 4.45 4.45 Total: -1.00 -32.41 295.05 -5.68 -38.09 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.92 Total: 1.78 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 0.22 Total: 7.93 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.27 Total: -46.10 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.16 Total: -19.90 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.51 Total: -2.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.41 -5.68 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526886487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.440 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds