Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46780 * 2 1 4 4 N 1.46501 * 109.46993 * 119.99686 * 2 1 3 5 5 C 1.46498 * 120.00263 * 304.72560 * 4 2 1 6 6 C 1.50699 * 109.47095 * 263.02754 * 5 4 2 7 7 H 1.08004 * 119.99432 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00362 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99735 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00450 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46945 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46876 * 119.99722 * 10 8 6 13 13 H 1.48489 * 109.47495 * 240.00055 * 10 8 6 14 14 C 1.34776 * 119.99354 * 124.72078 * 4 2 1 15 15 O 1.21649 * 120.00696 * 3.78050 * 14 4 2 16 16 C 1.47190 * 119.99762 * 183.77367 * 14 4 2 17 17 C 1.35088 * 122.48652 * 173.60122 * 16 14 4 18 18 S 1.76190 * 108.21864 * 180.02562 * 17 16 14 19 19 C 1.76063 * 90.15788 * 0.02562 * 18 17 16 20 20 O 1.35493 * 125.17696 * 179.97438 * 19 18 17 21 21 N 1.29250 * 109.63545 * 0.02562 * 19 18 17 22 22 H 1.09004 * 109.46695 * 299.99849 * 1 2 3 23 23 H 1.09002 * 109.47060 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.46807 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46760 * 239.99939 * 2 1 3 26 26 H 1.08999 * 109.46684 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47108 * 299.99523 * 3 2 1 28 28 H 1.08995 * 109.47524 * 60.00406 * 3 2 1 29 29 H 1.09001 * 109.47075 * 23.02940 * 5 4 2 30 30 H 1.09002 * 109.46845 * 143.02605 * 5 4 2 31 31 H 0.97006 * 120.00069 * 179.97438 * 9 8 6 32 32 H 1.08001 * 125.89279 * 0.03082 * 17 16 14 33 33 H 0.96701 * 114.00489 * 0.03416 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5812 -0.2532 2.5243 6 6 2.6202 0.6620 3.1191 7 1 3.5168 0.8943 2.5634 8 6 2.4268 1.2020 4.3728 9 7 1.3353 0.9187 5.0495 10 14 3.7151 2.3359 5.1104 11 1 4.8405 2.4945 4.1546 12 1 3.1078 3.6632 5.3839 13 1 4.2207 1.7521 6.3786 14 6 2.8698 -1.7282 1.0748 15 8 3.2867 -2.0479 -0.0224 16 6 3.2954 -2.4747 2.2698 17 6 4.0438 -3.5969 2.1960 18 16 4.3316 -4.1759 3.8350 19 6 3.3996 -2.8286 4.4798 20 8 3.1685 -2.5978 5.7948 21 7 2.9685 -2.0939 3.5077 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.6343 0.2796 2.4379 30 1 1.4513 -1.1228 3.1686 31 1 1.1994 1.2983 5.9318 32 1 4.4037 -4.0594 1.2888 33 1 3.5678 -3.2514 6.3850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526886487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = -29.925055 kcal Electronic energy + Delta-G solvation = -19377.769800 eV Core-core repulsion = 16338.117765 eV Total energy + Delta-G solvation = -3039.652035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51120 -39.89870 -38.26513 -37.42781 -34.69850 -32.90412 -30.90686 -28.97141 -28.03937 -26.46016 -24.86556 -23.64769 -21.23049 -20.99053 -19.49155 -18.60870 -18.40223 -17.18956 -16.89317 -16.57759 -16.35457 -16.11345 -15.67802 -15.03237 -14.64156 -14.21898 -13.98180 -13.75777 -13.38840 -13.27381 -13.13057 -13.03922 -12.85978 -12.72716 -12.54365 -12.24718 -12.08215 -11.58263 -11.40756 -11.07470 -10.54201 -10.33130 -9.87087 -9.58756 -9.23823 -7.99176 -6.02390 -0.38651 -0.02277 0.42536 1.19093 1.37386 1.40267 1.49268 2.14393 2.41358 2.46877 2.57087 3.34442 3.73973 4.06055 4.25213 4.27362 4.31146 4.43350 4.70735 4.82183 4.84275 4.96146 4.99754 5.22654 5.33995 5.48572 5.61176 5.89874 5.98926 6.07134 6.34570 6.58246 6.91321 7.05343 7.30410 7.60188 9.08620 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.011189 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.602123 B = 2501.802356 C = 4074.720246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.124 3.876 3 C -0.144 4.144 4 N -0.577 5.577 5 C 0.246 3.754 6 C -0.491 4.491 7 H 0.030 0.970 8 C 0.032 3.968 9 N -0.913 5.913 10 Si 0.933 3.067 11 H -0.280 1.280 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.577 3.423 15 O -0.587 6.587 16 C 0.026 3.974 17 C -0.190 4.190 18 S 0.105 5.895 19 C 0.268 3.732 20 O -0.427 6.427 21 N -0.452 5.452 22 H 0.050 0.950 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.013 0.987 30 H 0.068 0.932 31 H 0.258 0.742 32 H 0.204 0.796 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -9.318 -1.806 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.201 4.201 4 N -0.305 5.305 5 C 0.125 3.875 6 C -0.530 4.530 7 H 0.049 0.951 8 C -0.167 4.167 9 N -0.553 5.553 10 Si 0.761 3.239 11 H -0.206 1.206 12 H -0.206 1.206 13 H -0.209 1.209 14 C 0.364 3.636 15 O -0.471 6.471 16 C -0.104 4.104 17 C -0.331 4.331 18 S 0.352 5.648 19 C -0.052 4.052 20 O -0.229 6.229 21 N -0.181 5.181 22 H 0.069 0.931 23 H 0.112 0.888 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.221 0.779 33 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 3.080 -9.295 -1.680 9.935 hybrid contribution 0.675 0.920 0.425 1.218 sum 3.755 -8.375 -1.254 9.264 Atomic orbital electron populations 1.22053 0.93404 1.02061 1.03092 1.21210 0.95357 0.93572 0.87750 1.21981 1.00091 0.95513 1.02563 1.48346 1.43117 1.29236 1.09781 1.19618 0.93797 0.96569 0.77491 1.21204 1.04176 1.26645 1.00963 0.95131 1.25253 0.96664 0.97799 0.97022 1.70009 1.27035 1.45510 1.12777 0.85903 0.80192 0.79461 0.78368 1.20564 1.20626 1.20883 1.17465 0.79080 0.80458 0.86635 1.90664 1.58814 1.70623 1.27034 1.20013 1.03058 0.96907 0.90459 1.27035 1.04359 0.99613 1.02120 1.84553 1.53281 1.28567 0.98424 1.26065 0.96631 0.93055 0.89445 1.84872 1.73825 1.53963 1.10223 1.66918 1.24856 1.28225 0.98065 0.93113 0.88755 0.92906 0.89367 0.94657 0.89370 0.93022 0.96940 0.91522 0.93323 0.77936 0.71002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 9.10 71.99 0.66 -4.17 16 2 C 0.12 4.74 3.24 44.99 0.15 4.89 16 3 C -0.14 -5.28 8.93 71.98 0.64 -4.63 16 4 N -0.58 -26.24 2.38 -806.23 -1.92 -28.15 16 5 C 0.25 12.60 4.11 85.63 0.35 12.95 16 6 C -0.49 -27.05 7.24 25.60 0.19 -26.87 16 7 H 0.03 1.77 7.81 -2.91 -0.02 1.75 16 8 C 0.03 1.77 5.46 84.65 0.46 2.23 16 9 N -0.91 -52.76 13.29 21.44 0.28 -52.48 16 10 Si 0.93 44.87 29.54 68.60 2.03 46.90 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 13 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 14 C 0.58 26.19 7.57 86.59 0.66 26.85 16 15 O -0.59 -27.09 16.03 -4.18 -0.07 -27.16 16 16 C 0.03 1.09 6.47 40.51 0.26 1.35 16 17 C -0.19 -6.02 10.84 67.09 0.73 -5.29 16 18 S 0.10 2.55 23.38 -56.49 -1.32 1.23 16 19 C 0.27 9.35 8.91 130.62 1.16 10.51 16 20 O -0.43 -13.46 13.64 -87.93 -1.20 -14.66 16 21 N -0.45 -19.88 5.71 -304.24 -1.74 -21.62 16 22 H 0.05 1.83 6.50 -2.38 -0.02 1.81 16 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.09 3.34 6.93 -2.39 -0.02 3.32 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 2.13 7.31 -2.39 -0.02 2.12 16 29 H 0.01 0.68 6.20 -2.39 -0.01 0.67 16 30 H 0.07 3.68 5.24 -2.39 -0.01 3.67 16 31 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 32 H 0.20 5.53 8.02 -2.91 -0.02 5.51 16 33 H 0.43 6.70 9.03 -74.06 -0.67 6.03 16 Total: -1.00 -71.57 295.05 1.80 -69.76 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.48 Total: 8.37 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.25 Total: 17.82 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.37 Total: -102.26 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.27 Total: -41.82 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.32 Total: 1.23 kcal Total: -71.57 1.80 -69.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526886487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.837 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds