Wall clock time and date at job start Mon Mar 30 2020 01:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46676 * 2 1 4 4 S 1.81402 * 109.46975 * 179.97438 * 3 2 1 5 5 O 1.42099 * 110.53943 * 68.38117 * 4 3 2 6 6 O 1.42089 * 110.54491 * 291.62456 * 4 3 2 7 7 N 1.65601 * 104.44628 * 180.02562 * 4 3 2 8 8 C 1.39081 * 119.99998 * 65.00422 * 7 4 3 9 9 C 1.38745 * 119.65654 * 179.97438 * 8 7 4 10 10 C 1.40780 * 118.66766 * 180.25603 * 9 8 7 11 11 C 1.41556 * 120.99320 * 179.73075 * 10 9 8 12 12 H 1.08000 * 119.99885 * 23.25054 * 11 10 9 13 13 C 1.40023 * 120.00133 * 203.25381 * 11 10 9 14 14 N 1.30749 * 119.99608 * 17.06231 * 13 11 10 15 15 Si 1.86799 * 120.00303 * 197.05828 * 13 11 10 16 16 H 1.48501 * 109.47229 * 94.64674 * 15 13 11 17 17 H 1.48497 * 109.47198 * 214.65577 * 15 13 11 18 18 H 1.48502 * 109.46720 * 334.65245 * 15 13 11 19 19 C 1.41183 * 118.01505 * 359.50582 * 10 9 8 20 20 C 1.36553 * 119.14376 * 0.47561 * 19 10 9 21 21 N 1.32101 * 121.27055 * 359.76926 * 20 19 10 22 22 H 1.08990 * 109.47342 * 60.00141 * 1 2 3 23 23 H 1.09004 * 109.46436 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47230 * 299.99472 * 1 2 3 25 25 H 1.08997 * 109.47230 * 240.00527 * 2 1 3 26 26 H 1.08997 * 109.47008 * 119.99876 * 2 1 3 27 27 H 1.09006 * 109.47135 * 60.00243 * 3 2 1 28 28 H 1.09004 * 109.47470 * 300.00363 * 3 2 1 29 29 H 0.97006 * 119.99931 * 244.99883 * 7 4 3 30 30 H 1.08004 * 120.66698 * 359.97438 * 9 8 7 31 31 H 0.97001 * 119.99291 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.43179 * 180.26527 * 19 10 9 33 33 H 1.08008 * 119.36698 * 179.79149 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4426 0.0008 5 8 4.3530 0.9522 -1.2360 6 8 4.3521 0.9525 1.2379 7 7 4.2670 3.0463 0.0014 8 6 3.9471 3.8463 1.0932 9 6 4.2970 5.1889 1.0864 10 6 3.9679 5.9783 2.2047 11 6 4.3064 7.3519 2.2523 12 1 4.4695 7.9000 1.3361 13 6 4.4299 8.0002 3.4873 14 7 4.5662 7.2993 4.5827 15 14 4.4001 9.8661 3.5700 16 1 3.0182 10.3268 3.8584 17 1 5.3112 10.3284 4.6476 18 1 4.8474 10.4263 2.2694 19 6 3.2859 5.3601 3.2751 20 6 2.9825 4.0313 3.1916 21 7 3.3109 3.3185 2.1290 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 4.7321 3.4277 -0.7597 30 1 4.8156 5.6188 0.2422 31 1 4.6521 7.7484 5.4382 32 1 3.0106 5.9299 4.1503 33 1 2.4638 3.5539 4.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539599378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:42 Heat of formation + Delta-G solvation = -59.077881 kcal Electronic energy + Delta-G solvation = -18473.352302 eV Core-core repulsion = 15432.436106 eV Total energy + Delta-G solvation = -3040.916196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.75058 -36.66384 -35.53403 -34.92906 -34.79434 -33.60769 -30.84847 -28.25760 -27.59505 -26.12301 -22.16134 -21.87408 -21.45412 -18.93847 -18.06197 -17.23460 -16.32358 -16.05066 -15.54279 -15.23344 -14.48861 -14.40831 -14.13190 -13.50108 -13.24680 -13.15023 -12.59668 -12.56034 -12.37531 -11.97586 -11.69881 -11.54728 -11.48695 -11.42948 -11.27007 -11.10008 -10.91836 -10.63412 -10.42086 -10.09865 -10.01092 -9.51412 -8.24263 -8.19414 -7.25571 -6.96656 -4.74364 0.64848 2.62966 2.72788 2.95875 2.99499 3.03973 3.13383 3.76278 4.09258 4.48092 4.58866 4.68340 4.95202 5.07164 5.19271 5.42487 5.53397 5.59847 5.69187 5.94189 6.00017 6.13975 6.17933 6.58206 6.71216 6.79458 6.94680 7.02584 7.29439 7.52922 7.76846 8.00324 8.33737 8.61893 8.62293 9.32380 9.93705 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.004660 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.787472 B = 6007.039631 C = 6284.793001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.620 4.620 4 S 2.616 3.384 5 O -0.979 6.979 6 O -0.932 6.932 7 N -1.038 6.038 8 C 0.368 3.632 9 C -0.300 4.300 10 C 0.149 3.851 11 C -0.450 4.450 12 H 0.084 0.916 13 C 0.078 3.922 14 N -0.777 5.777 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.260 1.260 19 C -0.228 4.228 20 C 0.119 3.881 21 N -0.612 5.612 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.123 0.877 29 H 0.423 0.577 30 H 0.104 0.896 31 H 0.285 0.715 32 H 0.129 0.871 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 -5.162 -5.485 9.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.750 4.750 4 S 2.709 3.291 5 O -0.969 6.969 6 O -0.922 6.922 7 N -0.786 5.786 8 C 0.140 3.860 9 C -0.328 4.328 10 C 0.140 3.860 11 C -0.480 4.480 12 H 0.102 0.898 13 C -0.143 4.143 14 N -0.401 5.401 15 Si 0.739 3.261 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.184 1.184 19 C -0.251 4.251 20 C -0.029 4.029 21 N -0.335 5.335 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.258 0.742 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.147 0.853 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.575 -6.885 -5.128 10.236 hybrid contribution -0.058 2.396 -0.173 2.403 sum -5.633 -4.489 -5.302 8.943 Atomic orbital electron populations 1.21698 0.94196 1.01796 1.02437 1.21229 0.98436 0.92494 1.03135 1.30537 1.26933 1.05274 1.12274 1.04829 0.77693 0.72714 0.73817 1.93561 1.78667 1.78442 1.46235 1.93597 1.76513 1.77743 1.44319 1.53195 1.70167 1.29836 1.25443 1.17530 0.94352 0.88072 0.86054 1.21228 1.15637 0.92174 1.03795 1.17654 0.86031 0.92813 0.89493 1.19667 1.40827 0.94083 0.93447 0.89804 1.26019 0.91763 1.01500 0.95055 1.69785 1.31956 1.38548 0.99845 0.86185 0.79208 0.81424 0.79319 1.19086 1.20039 1.18364 1.21900 1.05365 0.95370 1.02477 1.21345 0.96919 0.91531 0.93148 1.66619 1.24322 1.39765 1.02840 0.92509 0.92308 0.92058 0.90948 0.90308 0.83298 0.85902 0.74185 0.87772 0.90343 0.85332 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.11 -1.36 5.94 -26.73 -0.16 -1.52 16 3 C -0.62 -8.59 5.90 37.16 0.22 -8.37 16 4 S 2.62 44.90 5.10 -107.50 -0.55 44.35 16 5 O -0.98 -17.67 18.08 -57.54 -1.04 -18.71 16 6 O -0.93 -19.74 16.96 -57.54 -0.98 -20.71 16 7 N -1.04 -18.72 5.75 31.09 0.18 -18.55 16 8 C 0.37 8.09 7.23 -154.98 -1.12 6.96 16 9 C -0.30 -6.97 9.74 -38.43 -0.37 -7.35 16 10 C 0.15 3.73 5.61 -106.55 -0.60 3.14 16 11 C -0.45 -11.09 9.12 -37.65 -0.34 -11.43 16 12 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 13 C 0.08 1.80 5.20 -17.34 -0.09 1.71 16 14 N -0.78 -18.71 10.91 55.55 0.61 -18.10 16 15 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 16 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 17 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 C -0.23 -5.54 8.74 -39.07 -0.34 -5.88 16 20 C 0.12 2.70 11.10 -18.04 -0.20 2.50 16 21 N -0.61 -13.84 7.42 -12.82 -0.10 -13.94 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.15 2.26 7.03 -51.92 -0.37 1.89 16 28 H 0.12 1.43 8.14 -51.92 -0.42 1.01 16 29 H 0.42 6.42 8.78 -34.47 -0.30 6.12 16 30 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 31 H 0.29 6.19 8.29 -40.82 -0.34 5.86 16 32 H 0.13 3.17 6.18 -52.49 -0.32 2.84 16 33 H 0.13 2.51 8.06 -52.48 -0.42 2.08 16 LS Contribution 296.78 15.07 4.47 4.47 Total: -1.00 -30.61 296.78 -8.99 -39.60 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.92 Total: 10.65 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.64 Total: -21.30 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.69 Total: -50.59 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.02 Total: -39.43 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 44.90 SS G_CDS: -0.55 Total: 44.35 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.61 -8.99 -39.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539599378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.474 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds