Wall clock time and date at job start Mon Mar 30 2020 01:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46676 * 2 1 4 4 S 1.81402 * 109.46975 * 179.97438 * 3 2 1 5 5 O 1.42099 * 110.53943 * 68.38117 * 4 3 2 6 6 O 1.42089 * 110.54491 * 291.62456 * 4 3 2 7 7 N 1.65601 * 104.44628 * 180.02562 * 4 3 2 8 8 C 1.39081 * 119.99998 * 65.00422 * 7 4 3 9 9 C 1.38745 * 119.65654 * 179.97438 * 8 7 4 10 10 C 1.40780 * 118.66766 * 180.25603 * 9 8 7 11 11 C 1.41556 * 120.99320 * 179.73075 * 10 9 8 12 12 H 1.08000 * 119.99885 * 23.25054 * 11 10 9 13 13 C 1.40023 * 120.00133 * 203.25381 * 11 10 9 14 14 N 1.30749 * 119.99608 * 17.06231 * 13 11 10 15 15 Si 1.86799 * 120.00303 * 197.05828 * 13 11 10 16 16 H 1.48501 * 109.47229 * 94.64674 * 15 13 11 17 17 H 1.48497 * 109.47198 * 214.65577 * 15 13 11 18 18 H 1.48502 * 109.46720 * 334.65245 * 15 13 11 19 19 C 1.41183 * 118.01505 * 359.50582 * 10 9 8 20 20 C 1.36553 * 119.14376 * 0.47561 * 19 10 9 21 21 N 1.32101 * 121.27055 * 359.76926 * 20 19 10 22 22 H 1.08990 * 109.47342 * 60.00141 * 1 2 3 23 23 H 1.09004 * 109.46436 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47230 * 299.99472 * 1 2 3 25 25 H 1.08997 * 109.47230 * 240.00527 * 2 1 3 26 26 H 1.08997 * 109.47008 * 119.99876 * 2 1 3 27 27 H 1.09006 * 109.47135 * 60.00243 * 3 2 1 28 28 H 1.09004 * 109.47470 * 300.00363 * 3 2 1 29 29 H 0.97006 * 119.99931 * 244.99883 * 7 4 3 30 30 H 1.08004 * 120.66698 * 359.97438 * 9 8 7 31 31 H 0.97001 * 119.99291 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.43179 * 180.26527 * 19 10 9 33 33 H 1.08008 * 119.36698 * 179.79149 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4426 0.0008 5 8 4.3530 0.9522 -1.2360 6 8 4.3521 0.9525 1.2379 7 7 4.2670 3.0463 0.0014 8 6 3.9471 3.8463 1.0932 9 6 4.2970 5.1889 1.0864 10 6 3.9679 5.9783 2.2047 11 6 4.3064 7.3519 2.2523 12 1 4.4695 7.9000 1.3361 13 6 4.4299 8.0002 3.4873 14 7 4.5662 7.2993 4.5827 15 14 4.4001 9.8661 3.5700 16 1 3.0182 10.3268 3.8584 17 1 5.3112 10.3284 4.6476 18 1 4.8474 10.4263 2.2694 19 6 3.2859 5.3601 3.2751 20 6 2.9825 4.0313 3.1916 21 7 3.3109 3.3185 2.1290 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 4.7321 3.4277 -0.7597 30 1 4.8156 5.6188 0.2422 31 1 4.6521 7.7484 5.4382 32 1 3.0106 5.9299 4.1503 33 1 2.4638 3.5539 4.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539599378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:42 Heat of formation + Delta-G solvation = -79.447251 kcal Electronic energy + Delta-G solvation = -18474.235584 eV Core-core repulsion = 15432.436106 eV Total energy + Delta-G solvation = -3041.799479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50045 -38.12919 -37.02924 -36.61223 -35.77484 -35.29459 -32.65559 -29.98767 -28.59754 -27.92209 -23.74451 -23.49035 -22.71325 -20.44701 -19.71419 -18.70710 -17.95770 -17.43656 -17.02653 -16.64945 -16.14597 -15.86838 -15.75982 -14.89603 -14.85722 -14.40054 -14.25534 -13.60775 -13.53022 -13.42320 -13.17859 -13.13521 -13.00498 -12.94631 -12.75745 -12.30822 -12.22725 -11.98425 -11.83109 -11.78886 -11.37062 -11.22956 -10.03240 -10.02398 -8.99786 -8.71383 -6.60184 -0.71289 0.88029 0.96472 1.41475 1.55168 1.56186 1.60428 2.18846 2.68310 2.80447 3.31797 3.47402 3.66416 3.73688 3.88494 4.22661 4.43870 4.49161 4.71321 4.78877 4.84358 4.97767 5.01085 5.07633 5.11219 5.22046 5.27781 5.33759 5.50032 5.87250 5.99578 6.20682 6.51570 6.78607 6.80492 7.53823 8.21805 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.004660 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.787472 B = 6007.039631 C = 6284.793001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.597 4.597 4 S 2.617 3.383 5 O -0.988 6.988 6 O -0.977 6.977 7 N -1.033 6.033 8 C 0.372 3.628 9 C -0.319 4.319 10 C 0.121 3.879 11 C -0.480 4.480 12 H 0.086 0.914 13 C 0.040 3.960 14 N -0.807 5.807 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.268 1.268 18 H -0.257 1.257 19 C -0.249 4.249 20 C 0.118 3.882 21 N -0.616 5.616 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.140 0.860 28 H 0.151 0.849 29 H 0.434 0.566 30 H 0.116 0.884 31 H 0.294 0.706 32 H 0.120 0.880 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -4.999 -6.232 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.731 4.731 4 S 2.715 3.285 5 O -0.979 6.979 6 O -0.967 6.967 7 N -0.781 5.781 8 C 0.143 3.857 9 C -0.347 4.347 10 C 0.113 3.887 11 C -0.510 4.510 12 H 0.104 0.896 13 C -0.179 4.179 14 N -0.432 5.432 15 Si 0.809 3.191 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.180 1.180 19 C -0.272 4.272 20 C -0.031 4.031 21 N -0.339 5.339 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.158 0.842 28 H 0.169 0.831 29 H 0.271 0.729 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.599 -6.733 -5.900 11.122 hybrid contribution 0.245 2.228 0.012 2.241 sum -6.354 -4.505 -5.888 9.764 Atomic orbital electron populations 1.21722 0.92371 1.03228 1.02784 1.21432 1.00020 0.90938 1.03923 1.30336 1.22189 1.07285 1.13279 1.04716 0.79318 0.71822 0.72651 1.93543 1.80001 1.78288 1.46054 1.93544 1.78693 1.78356 1.46073 1.53130 1.70461 1.29713 1.24836 1.17672 0.93326 0.88166 0.86571 1.21418 1.16378 0.92884 1.04001 1.18044 0.86580 0.93657 0.90444 1.19962 1.42100 0.94492 0.94411 0.89574 1.26875 0.90658 1.06186 0.94157 1.69824 1.32056 1.40679 1.00614 0.85079 0.79443 0.75160 0.79406 1.18386 1.19299 1.18028 1.21896 1.06726 0.96176 1.02430 1.21757 0.96322 0.91152 0.93830 1.66770 1.24524 1.39614 1.03000 0.91448 0.90435 0.92473 0.89405 0.90573 0.84151 0.83086 0.72872 0.86571 0.89461 0.86254 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.12 -2.65 5.94 30.60 0.18 -2.46 16 3 C -0.60 -15.23 5.90 71.98 0.42 -14.80 16 4 S 2.62 87.30 5.10 -56.49 -0.29 87.01 16 5 O -0.99 -34.43 18.08 -127.65 -2.31 -36.74 16 6 O -0.98 -41.29 16.96 -127.65 -2.17 -43.45 16 7 N -1.03 -36.55 5.75 -55.56 -0.32 -36.87 16 8 C 0.37 16.25 7.23 132.91 0.96 17.21 16 9 C -0.32 -14.94 9.74 23.01 0.22 -14.71 16 10 C 0.12 6.20 5.61 -21.12 -0.12 6.08 16 11 C -0.48 -23.97 9.12 23.52 0.21 -23.75 16 12 H 0.09 4.10 7.90 -2.91 -0.02 4.07 16 13 C 0.04 1.84 5.20 85.29 0.44 2.29 16 14 N -0.81 -39.21 10.91 21.84 0.24 -38.97 16 15 Si 0.99 34.90 29.59 68.60 2.03 36.93 16 16 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 17 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 18 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 19 C -0.25 -12.32 8.74 22.60 0.20 -12.12 16 20 C 0.12 5.35 11.10 84.26 0.94 6.29 16 21 N -0.62 -27.63 7.42 -194.47 -1.44 -29.08 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.14 4.00 7.03 -2.39 -0.02 3.98 16 28 H 0.15 3.02 8.14 -2.39 -0.02 3.01 16 29 H 0.43 12.85 8.78 -96.74 -0.85 12.00 16 30 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.29 12.78 8.29 -92.71 -0.77 12.02 16 32 H 0.12 6.04 6.18 -2.91 -0.02 6.02 16 33 H 0.15 5.94 8.06 -2.91 -0.02 5.92 16 Total: -1.00 -65.48 296.78 0.20 -65.27 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.28 Total: 33.59 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 4.18 Total: -37.71 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -1.52 Total: -104.92 kcal Atomic # 8 Polarization: -75.72 SS G_CDS: -4.47 Total: -80.19 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Atomic # 16 Polarization: 87.30 SS G_CDS: -0.29 Total: 87.01 kcal Total: -65.48 0.20 -65.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539599378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.173 kcal (2) G-P(sol) polarization free energy of solvation -65.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds