Wall clock time and date at job start Mon Mar 30 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42107 * 110.54273 * 2 1 4 4 O 1.42101 * 110.54536 * 223.25469 * 2 1 3 5 5 N 1.65592 * 104.45310 * 111.62309 * 2 1 3 6 6 C 1.39998 * 120.00263 * 298.76773 * 5 2 1 7 7 C 1.38865 * 120.00182 * 133.80912 * 6 5 2 8 8 C 1.38096 * 119.99695 * 180.02562 * 7 6 5 9 9 C 1.38852 * 120.00193 * 359.97242 * 8 7 6 10 10 N 1.39999 * 120.00031 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00338 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47110 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00084 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99682 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99996 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47108 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47141 * 119.99795 * 16 14 12 19 19 H 1.48498 * 109.47242 * 240.00153 * 16 14 12 20 20 C 1.38859 * 120.00030 * 0.26237 * 9 8 7 21 21 C 1.38090 * 120.00183 * 359.50552 * 20 9 8 22 22 H 1.09001 * 109.46894 * 313.39036 * 1 2 3 23 23 H 1.08993 * 109.47279 * 73.39426 * 1 2 3 24 24 H 1.09003 * 109.46873 * 193.39207 * 1 2 3 25 25 H 0.97003 * 120.00092 * 118.76522 * 5 2 1 26 26 H 1.07992 * 119.99662 * 0.02562 * 7 6 5 27 27 H 1.08001 * 119.99756 * 179.97438 * 8 7 6 28 28 H 0.97005 * 119.99956 * 0.02562 * 10 9 8 29 29 H 1.09006 * 109.46719 * 300.00044 * 11 10 9 30 30 H 1.08999 * 109.47096 * 59.99795 * 11 10 9 31 31 H 0.97001 * 119.99901 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.00099 * 179.72746 * 20 9 8 33 33 H 1.08002 * 120.00119 * 180.23788 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2273 -0.5909 1.4907 6 6 1.8370 0.0936 2.6479 7 6 1.2807 -0.6032 3.7125 8 6 0.8952 0.0722 4.8537 9 6 1.0645 1.4478 4.9369 10 7 0.6732 2.1326 6.0936 11 6 0.8512 3.5841 6.1812 12 6 0.3546 4.0713 7.5180 13 1 -0.0532 3.3699 8.2309 14 6 0.4209 5.4124 7.8310 15 7 0.9180 6.2664 6.9631 16 14 -0.1952 6.0165 9.4878 17 1 -0.7035 4.8655 10.2765 18 1 0.9188 6.6676 10.2228 19 1 -1.2914 6.9967 9.2809 20 6 1.6162 2.1453 3.8704 21 6 2.0061 1.4694 2.7311 22 1 -0.3633 0.7060 0.7468 23 1 -0.3633 0.2937 -0.9847 24 1 -0.3633 -0.9998 0.2380 25 1 2.7398 -1.4114 1.5621 26 1 1.1495 -1.6732 3.6478 27 1 0.4622 -0.4697 5.6815 28 1 0.2842 1.6459 6.8371 29 1 1.9085 3.8274 6.0761 30 1 0.2860 4.0682 5.3848 31 1 0.9643 7.2100 7.1831 32 1 1.7438 3.2159 3.9334 33 1 2.4388 2.0113 1.9031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564723741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:45 Heat of formation + Delta-G solvation = -45.695753 kcal Electronic energy + Delta-G solvation = -17976.287555 eV Core-core repulsion = 14935.951652 eV Total energy + Delta-G solvation = -3040.335904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.22795 -37.19466 -36.13582 -35.93137 -33.70938 -32.24472 -30.54843 -29.58438 -28.29898 -25.89219 -23.27096 -22.13357 -20.81641 -19.49749 -17.92383 -17.49178 -17.10319 -16.29333 -15.85758 -15.40810 -15.18339 -14.44572 -13.82212 -13.46245 -13.44818 -13.29133 -13.15670 -13.04362 -12.84804 -12.25649 -12.19772 -12.10069 -11.90495 -11.53055 -11.24864 -11.06003 -10.88541 -10.79003 -10.29257 -10.13307 -9.43402 -9.15235 -8.61823 -8.53250 -6.57727 -6.25505 -4.31226 0.14554 1.79237 1.94502 2.59853 3.18864 3.26659 3.29570 3.66160 4.11638 4.19858 4.22950 4.48205 4.62359 4.88172 5.11919 5.24381 5.34384 5.40059 5.55710 5.82007 5.95644 6.20635 6.44299 6.54481 6.81953 6.86050 7.03866 7.10506 7.36084 7.37529 7.59297 7.88681 8.18331 8.57917 8.83136 9.35522 10.85010 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042897 B = 0.003607 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.572971 B = 7761.722164 C = 8125.402373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.668 4.668 2 S 2.611 3.389 3 O -0.951 6.951 4 O -0.968 6.968 5 N -1.049 6.049 6 C 0.039 3.961 7 C -0.075 4.075 8 C -0.204 4.204 9 C 0.231 3.769 10 N -0.726 5.726 11 C 0.248 3.752 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.183 4.183 21 C -0.095 4.095 22 H 0.133 0.867 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.417 0.583 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.392 0.608 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.266 0.734 32 H 0.132 0.868 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 -13.713 -10.300 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.819 4.819 2 S 2.704 3.296 3 O -0.941 6.941 4 O -0.958 6.958 5 N -0.801 5.801 6 C -0.058 4.058 7 C -0.098 4.098 8 C -0.228 4.228 9 C 0.120 3.880 10 N -0.348 5.348 11 C 0.127 3.873 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.207 4.207 21 C -0.116 4.116 22 H 0.152 0.848 23 H 0.144 0.856 24 H 0.146 0.854 25 H 0.253 0.747 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.226 0.774 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.678 -12.833 -11.040 16.942 hybrid contribution -0.910 -0.250 1.594 1.852 sum -1.589 -13.083 -9.446 16.215 Atomic orbital electron populations 1.30444 1.28127 1.11848 1.11434 1.05001 0.77742 0.74413 0.72430 1.93590 1.77011 1.38137 1.85325 1.93593 1.78440 1.61839 1.61945 1.52972 1.67719 1.38576 1.20798 1.16987 1.08402 0.91271 0.89165 1.20683 0.97229 0.98926 0.92928 1.20405 1.10155 0.92652 0.99619 1.18218 0.90989 0.91027 0.87739 1.45667 1.65034 1.09724 1.14345 1.19172 0.96767 0.73921 0.97489 1.21215 1.42721 0.93267 1.00692 0.91924 1.24932 0.94905 0.96495 0.97625 1.69950 1.44371 1.03183 1.34990 0.86357 0.78567 0.78847 0.83143 1.19663 1.20742 1.20758 1.20714 1.06135 1.00734 0.93105 1.21592 0.98097 0.92898 0.99022 0.84843 0.85568 0.85413 0.74660 0.86451 0.86366 0.77442 0.95940 0.95950 0.92436 0.85031 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.12 10.75 101.05 1.09 -4.04 16 2 S 2.61 27.57 6.00 -107.50 -0.64 26.92 16 3 O -0.95 -13.54 15.18 -57.54 -0.87 -14.41 16 4 O -0.97 -12.53 18.08 -57.54 -1.04 -13.57 16 5 N -1.05 -11.00 5.68 32.46 0.18 -10.81 16 6 C 0.04 0.51 6.03 -83.66 -0.50 0.01 16 7 C -0.08 -0.95 9.96 -39.40 -0.39 -1.34 16 8 C -0.20 -2.98 9.89 -39.41 -0.39 -3.37 16 9 C 0.23 4.11 6.66 -83.67 -0.56 3.55 16 10 N -0.73 -14.45 5.74 -59.74 -0.34 -14.80 16 11 C 0.25 6.04 4.67 -5.19 -0.02 6.02 16 12 C -0.54 -14.20 9.28 -34.44 -0.32 -14.52 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 16 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.18 -3.28 9.31 -39.41 -0.37 -3.65 16 21 C -0.09 -1.49 9.23 -39.40 -0.36 -1.85 16 22 H 0.13 1.09 8.14 -51.92 -0.42 0.67 16 23 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.42 3.49 8.92 -34.46 -0.31 3.19 16 26 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 27 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 29 H 0.02 0.60 7.96 -51.93 -0.41 0.18 16 30 H 0.02 0.59 7.94 -51.93 -0.41 0.18 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.13 2.54 6.73 -52.48 -0.35 2.19 16 33 H 0.15 2.35 5.63 -52.49 -0.30 2.06 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -32.22 298.01 -8.21 -40.43 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -3.77 Total: 8.22 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.93 Total: -17.57 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.58 Total: -49.91 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.91 Total: -27.99 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 27.57 SS G_CDS: -0.64 Total: 26.92 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.22 -8.21 -40.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564723741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.270 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds