Wall clock time and date at job start Mon Mar 30 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42107 * 110.54273 * 2 1 4 4 O 1.42101 * 110.54536 * 223.25469 * 2 1 3 5 5 N 1.65592 * 104.45310 * 111.62309 * 2 1 3 6 6 C 1.39998 * 120.00263 * 298.76773 * 5 2 1 7 7 C 1.38865 * 120.00182 * 133.80912 * 6 5 2 8 8 C 1.38096 * 119.99695 * 180.02562 * 7 6 5 9 9 C 1.38852 * 120.00193 * 359.97242 * 8 7 6 10 10 N 1.39999 * 120.00031 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00338 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47110 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00084 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99682 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99996 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47108 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47141 * 119.99795 * 16 14 12 19 19 H 1.48498 * 109.47242 * 240.00153 * 16 14 12 20 20 C 1.38859 * 120.00030 * 0.26237 * 9 8 7 21 21 C 1.38090 * 120.00183 * 359.50552 * 20 9 8 22 22 H 1.09001 * 109.46894 * 313.39036 * 1 2 3 23 23 H 1.08993 * 109.47279 * 73.39426 * 1 2 3 24 24 H 1.09003 * 109.46873 * 193.39207 * 1 2 3 25 25 H 0.97003 * 120.00092 * 118.76522 * 5 2 1 26 26 H 1.07992 * 119.99662 * 0.02562 * 7 6 5 27 27 H 1.08001 * 119.99756 * 179.97438 * 8 7 6 28 28 H 0.97005 * 119.99956 * 0.02562 * 10 9 8 29 29 H 1.09006 * 109.46719 * 300.00044 * 11 10 9 30 30 H 1.08999 * 109.47096 * 59.99795 * 11 10 9 31 31 H 0.97001 * 119.99901 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.00099 * 179.72746 * 20 9 8 33 33 H 1.08002 * 120.00119 * 180.23788 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2273 -0.5909 1.4907 6 6 1.8370 0.0936 2.6479 7 6 1.2807 -0.6032 3.7125 8 6 0.8952 0.0722 4.8537 9 6 1.0645 1.4478 4.9369 10 7 0.6732 2.1326 6.0936 11 6 0.8512 3.5841 6.1812 12 6 0.3546 4.0713 7.5180 13 1 -0.0532 3.3699 8.2309 14 6 0.4209 5.4124 7.8310 15 7 0.9180 6.2664 6.9631 16 14 -0.1952 6.0165 9.4878 17 1 -0.7035 4.8655 10.2765 18 1 0.9188 6.6676 10.2228 19 1 -1.2914 6.9967 9.2809 20 6 1.6162 2.1453 3.8704 21 6 2.0061 1.4694 2.7311 22 1 -0.3633 0.7060 0.7468 23 1 -0.3633 0.2937 -0.9847 24 1 -0.3633 -0.9998 0.2380 25 1 2.7398 -1.4114 1.5621 26 1 1.1495 -1.6732 3.6478 27 1 0.4622 -0.4697 5.6815 28 1 0.2842 1.6459 6.8371 29 1 1.9085 3.8274 6.0761 30 1 0.2860 4.0682 5.3848 31 1 0.9643 7.2100 7.1831 32 1 1.7438 3.2159 3.9334 33 1 2.4388 2.0113 1.9031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564723741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:45 Heat of formation + Delta-G solvation = -70.642038 kcal Electronic energy + Delta-G solvation = -17977.369308 eV Core-core repulsion = 14935.951652 eV Total energy + Delta-G solvation = -3041.417656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47085 -38.20065 -37.38646 -37.01129 -35.31148 -33.89739 -31.78794 -30.25596 -29.90531 -27.47776 -24.94038 -23.47432 -22.19021 -20.43803 -19.25506 -18.55398 -18.49417 -17.42444 -17.21995 -16.89197 -16.36894 -15.99125 -15.07570 -15.04215 -14.67407 -14.34200 -14.14660 -14.00437 -13.95530 -13.91135 -13.51471 -13.20248 -13.06983 -12.94858 -12.79284 -12.53843 -12.27935 -12.08720 -11.87077 -11.46192 -11.34247 -10.78424 -10.23458 -9.81903 -8.29839 -7.99731 -6.43634 -0.70776 0.55883 0.71339 1.42004 1.42222 1.55373 1.71217 2.34790 2.83073 2.92739 2.96270 3.06193 3.30446 4.00347 4.12097 4.20372 4.20641 4.37012 4.58873 4.72706 4.87755 4.97013 5.11696 5.27670 5.31545 5.39566 5.55511 5.58886 5.64844 5.87699 6.00847 6.29847 6.49790 6.76037 7.19045 7.31290 8.82121 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042897 B = 0.003607 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.572971 B = 7761.722164 C = 8125.402373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.619 3.381 3 O -0.995 6.995 4 O -0.990 6.990 5 N -1.043 6.043 6 C 0.063 3.937 7 C -0.063 4.063 8 C -0.189 4.189 9 C 0.202 3.798 10 N -0.733 5.733 11 C 0.269 3.731 12 C -0.555 4.555 13 H 0.073 0.927 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.977 3.023 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.278 1.278 20 C -0.206 4.206 21 C -0.106 4.106 22 H 0.132 0.868 23 H 0.148 0.852 24 H 0.156 0.844 25 H 0.431 0.569 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.400 0.600 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.268 0.732 32 H 0.098 0.902 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.619 -16.603 -9.982 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.716 3.284 3 O -0.985 6.985 4 O -0.981 6.981 5 N -0.796 5.796 6 C -0.035 4.035 7 C -0.085 4.085 8 C -0.212 4.212 9 C 0.095 3.905 10 N -0.359 5.359 11 C 0.146 3.854 12 C -0.593 4.593 13 H 0.091 0.909 14 C -0.192 4.192 15 N -0.567 5.567 16 Si 0.801 3.199 17 H -0.183 1.183 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.229 4.229 21 C -0.128 4.128 22 H 0.151 0.849 23 H 0.167 0.833 24 H 0.174 0.826 25 H 0.269 0.731 26 H 0.182 0.818 27 H 0.162 0.838 28 H 0.235 0.765 29 H 0.007 0.993 30 H 0.010 0.990 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.999 -15.790 -10.754 19.209 hybrid contribution -0.474 0.508 1.287 1.463 sum -2.474 -15.283 -9.466 18.146 Atomic orbital electron populations 1.30291 1.23442 1.13758 1.13010 1.04527 0.79155 0.72897 0.71795 1.93545 1.79094 1.40192 1.85694 1.93566 1.79954 1.62137 1.62396 1.52833 1.68338 1.38678 1.19736 1.16988 1.06267 0.90219 0.89989 1.21099 0.95158 1.00973 0.91223 1.20718 1.08625 0.90934 1.00955 1.18452 0.92582 0.92539 0.86974 1.45213 1.67156 1.07729 1.15815 1.18574 0.94024 0.76815 0.96005 1.21626 1.42436 0.93835 1.01398 0.90878 1.25929 0.94959 0.96744 1.01575 1.70092 1.45729 1.03575 1.37256 0.85215 0.77911 0.78466 0.78273 1.18257 1.20452 1.20358 1.20581 1.08072 0.99541 0.94746 1.21554 0.98744 0.94441 0.98070 0.84926 0.83336 0.82592 0.73085 0.81835 0.83771 0.76536 0.99307 0.99038 0.92283 0.88375 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.68 10.75 113.37 1.22 -6.46 16 2 S 2.62 50.81 6.00 -56.49 -0.34 50.47 16 3 O -1.00 -28.45 15.18 -127.65 -1.94 -30.38 16 4 O -0.99 -23.85 18.08 -127.65 -2.31 -26.16 16 5 N -1.04 -19.08 5.68 -51.22 -0.29 -19.37 16 6 C 0.06 1.51 6.03 38.14 0.23 1.74 16 7 C -0.06 -1.33 9.96 22.39 0.22 -1.10 16 8 C -0.19 -4.99 9.89 22.38 0.22 -4.77 16 9 C 0.20 7.25 6.66 38.13 0.25 7.50 16 10 N -0.73 -30.10 5.74 -342.93 -1.97 -32.07 16 11 C 0.27 13.96 4.67 85.63 0.40 14.36 16 12 C -0.56 -29.90 9.28 25.60 0.24 -29.66 16 13 H 0.07 3.69 7.60 -2.91 -0.02 3.66 16 14 C 0.01 0.42 5.46 84.65 0.46 0.88 16 15 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 16 Si 0.98 42.16 29.54 68.60 2.03 44.18 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 C -0.21 -7.80 9.31 22.38 0.21 -7.60 16 21 C -0.11 -3.40 9.23 22.38 0.21 -3.19 16 22 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.43 5.77 8.92 -96.75 -0.86 4.90 16 26 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 27 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.40 14.69 8.34 -92.70 -0.77 13.92 16 29 H -0.01 -0.62 7.96 -2.38 -0.02 -0.64 16 30 H -0.01 -0.46 7.94 -2.39 -0.02 -0.48 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.10 4.28 6.73 -2.91 -0.02 4.26 16 33 H 0.14 4.69 5.63 -2.91 -0.02 4.68 16 Total: -1.00 -72.96 298.01 -1.36 -74.32 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.49 Total: 21.39 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 3.66 Total: -28.30 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -1.97 Total: -105.52 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -4.25 Total: -56.54 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -0.34 Total: 50.47 kcal Total: -72.96 -1.36 -74.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564723741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.675 kcal (2) G-P(sol) polarization free energy of solvation -72.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds