Wall clock time and date at job start Mon Mar 30 2020 02:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76207 * 99.99804 * 2 1 4 4 N 1.32486 * 119.15696 * 179.97438 * 3 2 1 5 5 C 1.32289 * 120.78858 * 179.97438 * 4 3 2 6 6 C 1.39029 * 119.13826 * 0.28364 * 5 4 3 7 7 O 1.36030 * 120.76750 * 179.69692 * 6 5 4 8 8 C 1.42904 * 116.99736 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.46715 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.47103 * 65.00220 * 9 8 7 11 11 C 1.42906 * 113.99828 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.46791 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99808 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99972 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99913 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46943 * 90.00230 * 16 14 12 18 18 H 1.48502 * 109.47222 * 210.00074 * 16 14 12 19 19 H 1.48497 * 109.47415 * 330.00316 * 16 14 12 20 20 C 1.39037 * 118.45875 * 359.43610 * 6 5 4 21 21 N 1.32282 * 119.13958 * 0.55790 * 20 6 5 22 22 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47129 * 300.00128 * 1 2 3 24 24 H 1.09008 * 109.47044 * 59.99740 * 1 2 3 25 25 H 1.08002 * 120.42820 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.46914 * 300.00016 * 8 7 6 27 27 H 1.08996 * 109.47082 * 60.00085 * 8 7 6 28 28 H 1.09004 * 109.46631 * 184.99735 * 9 8 7 29 29 H 1.08994 * 109.47806 * 304.99981 * 9 8 7 30 30 H 1.09001 * 109.47106 * 299.99404 * 11 10 9 31 31 H 1.08995 * 109.46964 * 59.99820 * 11 10 9 32 32 H 0.97004 * 119.99438 * 179.97438 * 15 14 12 33 33 H 1.07994 * 120.42454 * 180.28484 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 3.3674 2.1701 0.0005 5 6 3.6341 3.4658 0.0000 6 6 2.5811 4.3737 0.0050 7 8 2.8174 5.7133 0.0108 8 6 1.6761 6.5733 0.0162 9 6 2.1369 8.0322 0.0229 10 8 2.8221 8.3209 -1.1974 11 6 3.2961 9.6656 -1.2937 12 6 3.9992 9.8571 -2.6129 13 1 4.0767 9.0341 -3.3079 14 6 4.5444 11.0826 -2.9320 15 7 5.1584 11.2496 -4.0829 16 14 4.4109 12.5058 -1.7294 17 1 5.5857 12.4982 -0.8210 18 1 4.3741 13.7866 -2.4802 19 1 3.1669 12.3643 -0.9309 20 6 1.2812 3.8806 -0.0018 21 7 1.0886 2.5719 -0.0013 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 4.6565 3.8139 0.0000 26 1 1.0756 6.3856 -0.8739 27 1 1.0778 6.3775 0.9060 28 1 1.2702 8.6865 0.1165 29 1 2.8092 8.1970 0.8648 30 1 2.4532 10.3536 -1.2277 31 1 3.9923 9.8646 -0.4790 32 1 5.5416 12.1120 -4.3075 33 1 0.4396 4.5574 -0.0028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578644141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:11 Heat of formation + Delta-G solvation = -58.286101 kcal Electronic energy + Delta-G solvation = -17413.979775 eV Core-core repulsion = 14373.097913 eV Total energy + Delta-G solvation = -3040.881862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.25704 -39.85499 -38.41839 -35.02009 -34.90619 -32.67714 -31.25234 -29.83646 -29.45713 -26.12626 -25.36213 -24.03199 -23.37045 -19.72004 -19.39399 -19.16725 -18.83146 -17.82728 -16.90671 -16.59295 -16.41487 -16.24236 -15.62279 -15.50380 -15.11344 -14.88323 -14.58683 -14.28102 -14.03518 -13.47975 -13.43730 -13.13576 -12.90000 -12.61826 -12.44692 -12.13624 -12.10361 -11.82091 -11.60280 -11.37981 -10.94660 -10.49328 -10.40184 -10.38344 -8.63534 -8.38129 -6.46897 -0.32658 -0.19675 0.20290 1.21459 1.33801 1.37401 1.47885 1.94659 2.29149 2.44614 2.94608 2.96110 3.04409 3.17221 3.51065 3.68745 4.02246 4.12033 4.34291 4.34888 4.38179 4.46344 4.53277 4.59339 4.70520 4.85640 4.96979 5.00189 5.42104 5.56011 5.89767 6.07756 6.57613 6.63968 6.70964 7.17636 8.79255 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047001 B = 0.002947 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.591993 B = 9497.963331 C = 9736.023161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.016 6.016 3 C 0.231 3.769 4 N -0.485 5.485 5 C 0.126 3.874 6 C 0.026 3.974 7 O -0.307 6.307 8 C 0.057 3.943 9 C 0.046 3.954 10 O -0.408 6.408 11 C 0.179 3.821 12 C -0.549 4.549 13 H 0.026 0.974 14 C 0.010 3.990 15 N -0.944 5.944 16 Si 0.959 3.041 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.239 1.239 20 C 0.081 3.919 21 N -0.493 5.493 22 H 0.133 0.867 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.192 0.808 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.013 0.987 32 H 0.273 0.727 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.729 -17.115 14.317 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.216 5.784 3 C -0.144 4.144 4 N -0.202 5.202 5 C -0.044 4.044 6 C -0.028 4.028 7 O -0.219 6.219 8 C -0.018 4.018 9 C -0.030 4.030 10 O -0.328 6.328 11 C 0.104 3.896 12 C -0.587 4.587 13 H 0.044 0.956 14 C -0.188 4.188 15 N -0.584 5.584 16 Si 0.780 3.220 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.162 1.162 20 C -0.089 4.089 21 N -0.211 5.211 22 H 0.151 0.849 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.209 0.791 26 H 0.097 0.903 27 H 0.139 0.861 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.895 -18.989 14.057 26.451 hybrid contribution -0.383 2.893 -0.064 2.919 sum -12.278 -16.096 13.993 24.609 Atomic orbital electron populations 1.23620 0.91518 1.08013 1.07013 1.85763 1.09699 0.91877 1.91106 1.25201 0.87177 1.01896 1.00078 1.68575 1.21801 1.15691 1.14083 1.23072 1.00660 0.86228 0.94469 1.20883 0.96458 0.85845 0.99596 1.86280 1.35984 1.12033 1.87554 1.23268 0.86927 0.87350 1.04219 1.22788 0.97971 0.94299 0.87988 1.87923 1.75324 1.31130 1.38437 1.20339 0.93463 0.80537 0.95274 1.21197 1.36923 0.97783 1.02786 0.95558 1.25914 0.93515 1.01742 0.97620 1.70047 1.37892 1.25994 1.24425 0.85560 0.80632 0.77139 0.78694 1.18564 1.20003 1.16174 1.23855 0.96180 0.92448 0.96371 1.68643 1.34193 1.03746 1.14547 0.84885 0.89063 0.89426 0.79079 0.90308 0.86067 0.88741 0.92110 0.96160 0.96976 0.91795 0.77836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.62 113.37 1.09 -0.58 16 2 S -0.02 -0.32 22.89 -56.49 -1.29 -1.61 16 3 C 0.23 5.98 7.85 180.47 1.42 7.40 16 4 N -0.48 -13.68 10.39 -196.19 -2.04 -15.72 16 5 C 0.13 3.33 11.26 84.81 0.96 4.29 16 6 C 0.03 0.66 6.73 22.65 0.15 0.82 16 7 O -0.31 -8.65 10.13 -89.24 -0.90 -9.56 16 8 C 0.06 1.25 5.15 71.98 0.37 1.62 16 9 C 0.05 1.31 6.32 71.98 0.45 1.77 16 10 O -0.41 -18.00 10.29 -144.33 -1.49 -19.49 16 11 C 0.18 8.65 4.76 71.24 0.34 8.99 16 12 C -0.55 -33.22 9.99 25.60 0.26 -32.97 16 13 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 14 C 0.01 0.58 5.47 84.65 0.46 1.04 16 15 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 16 Si 0.96 42.33 27.47 68.60 1.88 44.22 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 20 C 0.08 1.76 10.30 84.82 0.87 2.63 16 21 N -0.49 -11.72 9.12 -196.19 -1.79 -13.51 16 22 H 0.13 0.91 8.14 -2.40 -0.02 0.89 16 23 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 24 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 25 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.08 1.67 7.70 -2.39 -0.02 1.65 16 27 H 0.12 1.54 7.72 -2.39 -0.02 1.52 16 28 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 31 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.21 2.92 6.45 -2.91 -0.02 2.90 16 Total: -1.00 -76.37 304.16 2.10 -74.27 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.06 Total: 5.54 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.37 Total: -5.00 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -3.53 Total: -88.37 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -2.39 Total: -29.05 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.22 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.29 Total: -1.61 kcal Total: -76.37 2.10 -74.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578644141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.986 kcal (2) G-P(sol) polarization free energy of solvation -76.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds