Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46916 * 299.99882 * 3 2 1 6 6 H 1.48496 * 109.47299 * 60.00004 * 3 2 1 7 7 C 1.37874 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00003 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47370 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00329 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.38253 * 119.99890 * 270.01643 * 12 11 10 14 14 C 1.38220 * 120.00051 * 180.02562 * 13 12 11 15 15 C 1.38255 * 119.99697 * 359.95697 * 14 13 12 16 16 C 1.38217 * 120.00132 * 0.07194 * 15 14 13 17 17 S 1.76199 * 119.99635 * 179.97438 * 16 15 14 18 18 N 1.65600 * 107.21686 * 269.94654 * 17 16 15 19 19 O 1.42098 * 106.40706 * 23.48889 * 17 16 15 20 20 O 1.42109 * 106.40127 * 156.41361 * 17 16 15 21 21 C 1.38215 * 119.99815 * 89.99805 * 12 11 10 22 22 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47941 * 59.99349 * 9 7 2 24 24 H 1.09001 * 109.47242 * 299.98956 * 9 7 2 25 25 H 1.00907 * 110.99703 * 303.95179 * 10 9 7 26 26 H 1.08990 * 109.47349 * 59.99479 * 11 10 9 27 27 H 1.09006 * 109.47060 * 299.99442 * 11 10 9 28 28 H 1.08002 * 120.00348 * 359.97438 * 13 12 11 29 29 H 1.07999 * 120.00153 * 179.97438 * 14 13 12 30 30 H 1.08005 * 119.99804 * 179.97438 * 15 14 13 31 31 H 0.97007 * 120.00040 * 150.00171 * 18 17 16 32 32 H 0.96996 * 120.00311 * 330.00354 * 18 17 16 33 33 H 1.07995 * 120.00164 * 359.72517 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5149 -6.0259 0.0005 13 6 2.9774 -6.5390 -1.1971 14 6 3.9029 -7.5655 -1.1978 15 6 4.3669 -8.0786 -0.0007 16 6 3.9041 -7.5661 1.1966 17 16 4.4950 -8.2206 2.7221 18 7 3.4844 -9.4617 3.1471 19 8 5.7582 -8.8089 2.4439 20 8 4.3095 -7.2012 3.6947 21 6 2.9788 -6.5388 1.1972 22 1 -0.4851 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8405 -3.5486 -0.7809 26 1 0.8802 -4.9817 -0.8885 27 1 0.8809 -4.9812 0.8915 28 1 2.6149 -6.1382 -2.1322 29 1 4.2639 -7.9666 -2.1333 30 1 5.0898 -8.8811 -0.0012 31 1 3.8249 -10.2094 3.6630 32 1 2.5521 -9.4412 2.8803 33 1 2.6211 -6.1348 2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578860055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = -54.809425 kcal Electronic energy + Delta-G solvation = -17799.223996 eV Core-core repulsion = 14758.492893 eV Total energy + Delta-G solvation = -3040.731102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.45062 -37.24446 -35.91478 -35.47738 -33.40494 -32.80142 -31.36260 -31.04875 -27.12993 -24.49363 -23.35822 -21.77768 -21.33272 -19.55985 -18.11998 -17.51887 -16.88234 -16.42682 -16.11419 -15.63951 -14.99896 -14.77528 -14.42863 -14.05407 -13.67330 -13.28312 -12.72634 -12.41495 -12.37678 -12.26740 -12.15944 -12.03146 -11.70412 -11.39808 -11.04990 -10.94196 -10.75416 -10.67138 -10.53875 -10.01585 -9.46530 -9.24882 -8.88862 -8.51802 -7.40863 -6.06894 -4.08944 0.27603 0.73755 1.23506 2.99055 3.30039 3.35478 3.37587 3.43261 3.66359 4.34738 4.41881 4.75553 4.79049 4.95257 5.16298 5.29470 5.33514 5.40496 5.52688 5.74217 5.79664 5.85984 6.00786 6.09161 6.17977 6.49936 6.76764 6.79147 7.14545 7.32928 7.73216 8.05936 8.28656 8.51665 9.00144 9.56398 11.04232 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.003791 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.456147 B = 7384.542271 C = 7781.904427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.091 3.909 12 C -0.086 4.086 13 C -0.057 4.057 14 C -0.142 4.142 15 C -0.027 4.027 16 C -0.678 4.678 17 S 2.703 3.297 18 N -1.250 6.250 19 O -0.968 6.968 20 O -0.957 6.957 21 C -0.002 4.002 22 H 0.261 0.739 23 H -0.012 1.012 24 H 0.030 0.970 25 H 0.330 0.670 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.419 0.581 32 H 0.417 0.583 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -21.395 0.576 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.038 4.038 12 C -0.088 4.088 13 C -0.075 4.075 14 C -0.161 4.161 15 C -0.047 4.047 16 C -0.766 4.766 17 S 2.792 3.208 18 N -0.923 5.923 19 O -0.958 6.958 20 O -0.946 6.946 21 C -0.022 4.022 22 H 0.071 0.929 23 H 0.006 0.994 24 H 0.048 0.952 25 H 0.147 0.853 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.248 0.752 32 H 0.244 0.756 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.463 -20.794 1.703 21.567 hybrid contribution -0.710 0.707 -1.536 1.833 sum 4.753 -20.087 0.167 20.642 Atomic orbital electron populations 1.69967 1.06102 1.26778 1.50903 1.24985 0.94889 0.99431 0.95226 0.86409 0.80104 0.83190 0.77524 1.19607 1.21093 1.20909 1.21206 0.93627 0.90115 1.50402 0.91829 1.19607 0.90545 0.87212 0.95963 1.60749 1.21126 1.00449 1.49144 1.20933 0.93127 0.88583 1.01154 1.20227 0.98668 0.97118 0.92754 1.21486 0.94002 0.93831 0.98226 1.21234 0.98616 0.98060 0.98168 1.20844 0.95512 0.97143 0.91202 1.30549 1.14338 1.12456 1.19239 1.01492 0.72729 0.72936 0.73655 1.53173 1.24936 1.41527 1.72703 1.93578 1.39401 1.77422 1.85368 1.93642 1.85387 1.57580 1.57984 1.20919 0.91014 0.90734 0.99527 0.92913 0.99441 0.95160 0.85326 0.94972 0.90401 0.85289 0.85170 0.84466 0.75168 0.75614 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.61 9.32 -34.45 -0.32 -14.93 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 4.99 5.44 -4.98 -0.03 4.97 16 10 N -0.68 -14.46 6.48 -116.34 -0.75 -15.22 16 11 C 0.09 1.54 5.81 -4.98 -0.03 1.51 16 12 C -0.09 -1.23 5.39 -104.62 -0.56 -1.79 16 13 C -0.06 -0.69 9.70 -39.58 -0.38 -1.07 16 14 C -0.14 -1.49 10.05 -39.58 -0.40 -1.89 16 15 C -0.03 -0.30 9.52 -39.58 -0.38 -0.67 16 16 C -0.68 -7.98 5.97 -39.58 -0.24 -8.22 16 17 S 2.70 29.24 6.28 -107.50 -0.68 28.56 16 18 N -1.25 -7.80 9.52 60.35 0.57 -7.22 16 19 O -0.97 -12.79 17.28 -57.17 -0.99 -13.78 16 20 O -0.96 -14.24 17.28 -57.17 -0.99 -15.23 16 21 C 0.00 -0.03 9.18 -39.58 -0.36 -0.39 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.33 6.69 8.72 -39.29 -0.34 6.34 16 26 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.21 7.62 -52.48 -0.40 0.81 16 31 H 0.42 1.82 8.96 -34.47 -0.31 1.51 16 32 H 0.42 1.77 8.96 -34.47 -0.31 1.46 16 33 H 0.14 1.96 7.61 -52.49 -0.40 1.56 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -35.97 303.41 -9.18 -45.15 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.84 Total: 3.36 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.80 Total: -20.98 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.56 Total: -48.40 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.98 Total: -29.00 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 29.24 SS G_CDS: -0.68 Total: 28.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.97 -9.18 -45.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578860055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.664 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds