Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46916 * 299.99882 * 3 2 1 6 6 H 1.48496 * 109.47299 * 60.00004 * 3 2 1 7 7 C 1.37874 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00003 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47370 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00329 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.38253 * 119.99890 * 270.01643 * 12 11 10 14 14 C 1.38220 * 120.00051 * 180.02562 * 13 12 11 15 15 C 1.38255 * 119.99697 * 359.95697 * 14 13 12 16 16 C 1.38217 * 120.00132 * 0.07194 * 15 14 13 17 17 S 1.76199 * 119.99635 * 179.97438 * 16 15 14 18 18 N 1.65600 * 107.21686 * 269.94654 * 17 16 15 19 19 O 1.42098 * 106.40706 * 23.48889 * 17 16 15 20 20 O 1.42109 * 106.40127 * 156.41361 * 17 16 15 21 21 C 1.38215 * 119.99815 * 89.99805 * 12 11 10 22 22 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47941 * 59.99349 * 9 7 2 24 24 H 1.09001 * 109.47242 * 299.98956 * 9 7 2 25 25 H 1.00907 * 110.99703 * 303.95179 * 10 9 7 26 26 H 1.08990 * 109.47349 * 59.99479 * 11 10 9 27 27 H 1.09006 * 109.47060 * 299.99442 * 11 10 9 28 28 H 1.08002 * 120.00348 * 359.97438 * 13 12 11 29 29 H 1.07999 * 120.00153 * 179.97438 * 14 13 12 30 30 H 1.08005 * 119.99804 * 179.97438 * 15 14 13 31 31 H 0.97007 * 120.00040 * 150.00171 * 18 17 16 32 32 H 0.96996 * 120.00311 * 330.00354 * 18 17 16 33 33 H 1.07995 * 120.00164 * 359.72517 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5149 -6.0259 0.0005 13 6 2.9774 -6.5390 -1.1971 14 6 3.9029 -7.5655 -1.1978 15 6 4.3669 -8.0786 -0.0007 16 6 3.9041 -7.5661 1.1966 17 16 4.4950 -8.2206 2.7221 18 7 3.4844 -9.4617 3.1471 19 8 5.7582 -8.8089 2.4439 20 8 4.3095 -7.2012 3.6947 21 6 2.9788 -6.5388 1.1972 22 1 -0.4851 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8405 -3.5486 -0.7809 26 1 0.8802 -4.9817 -0.8885 27 1 0.8809 -4.9812 0.8915 28 1 2.6149 -6.1382 -2.1322 29 1 4.2639 -7.9666 -2.1333 30 1 5.0898 -8.8811 -0.0012 31 1 3.8249 -10.2094 3.6630 32 1 2.5521 -9.4412 2.8803 33 1 2.6211 -6.1348 2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578860055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = -84.845993 kcal Electronic energy + Delta-G solvation = -17800.526479 eV Core-core repulsion = 14758.492893 eV Total energy + Delta-G solvation = -3042.033586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44187 -38.24542 -37.12705 -36.91925 -34.74962 -34.04140 -32.51088 -32.23430 -28.93479 -26.06724 -24.31540 -23.54024 -22.60204 -20.42095 -19.12746 -18.45298 -18.31739 -17.64876 -17.17974 -16.81344 -16.51900 -16.10811 -15.74453 -15.37579 -15.02567 -14.71150 -14.07179 -13.87741 -13.35084 -13.32619 -13.22842 -13.18739 -13.16741 -13.05051 -12.71077 -12.66788 -12.22526 -11.91604 -11.80838 -11.34858 -11.26424 -10.69011 -10.40105 -9.92431 -9.16617 -8.24902 -6.35874 -0.59463 -0.20479 0.26792 1.39968 1.41399 1.54968 2.17423 2.38131 2.44673 2.79274 3.08773 3.39468 3.65793 3.86254 3.91436 4.06097 4.22676 4.27041 4.49856 4.64488 4.81116 4.93700 5.02657 5.06400 5.22162 5.27487 5.28336 5.46929 5.58591 5.83466 5.98754 6.37228 6.38543 6.66128 6.84878 7.35159 8.86730 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.003791 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.456147 B = 7384.542271 C = 7781.904427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.688 5.688 11 C 0.094 3.906 12 C -0.105 4.105 13 C -0.059 4.059 14 C -0.134 4.134 15 C -0.026 4.026 16 C -0.677 4.677 17 S 2.730 3.270 18 N -1.230 6.230 19 O -0.989 6.989 20 O -1.001 7.001 21 C -0.019 4.019 22 H 0.266 0.734 23 H -0.032 1.032 24 H 0.003 0.997 25 H 0.336 0.664 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.431 0.569 32 H 0.429 0.571 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 -22.581 -0.319 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.318 5.318 11 C -0.035 4.035 12 C -0.107 4.107 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.045 4.045 16 C -0.765 4.765 17 S 2.818 3.182 18 N -0.909 5.909 19 O -0.979 6.979 20 O -0.990 6.990 21 C -0.039 4.039 22 H 0.075 0.925 23 H -0.014 1.014 24 H 0.021 0.979 25 H 0.153 0.847 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.161 0.839 29 H 0.183 0.817 30 H 0.180 0.820 31 H 0.264 0.736 32 H 0.259 0.741 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.748 -22.016 0.808 23.041 hybrid contribution -1.122 0.933 -1.268 1.934 sum 5.626 -21.083 -0.460 21.826 Atomic orbital electron populations 1.70081 1.07705 1.28011 1.51453 1.25915 0.95793 1.03280 0.94498 0.85293 0.78841 0.78358 0.77849 1.18920 1.20036 1.20394 1.21559 0.93764 0.91515 1.50736 0.91999 1.19242 0.90581 0.88569 0.93622 1.60586 1.20588 1.01106 1.49567 1.20905 0.93904 0.87491 1.01182 1.19991 0.99370 0.97208 0.94098 1.21696 0.94092 0.94122 0.97825 1.21625 0.97271 0.96843 0.99555 1.21270 0.95184 0.97218 0.90816 1.30562 1.13786 1.12057 1.20134 1.00458 0.72340 0.72587 0.72775 1.52698 1.25089 1.40696 1.72462 1.93545 1.41141 1.77689 1.85536 1.93598 1.86077 1.59818 1.59542 1.20888 0.92131 0.91832 0.99044 0.92529 1.01435 0.97932 0.84696 0.94188 0.91067 0.83887 0.81652 0.82004 0.73620 0.74106 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.01 9.32 25.60 0.24 -30.77 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.12 5.44 85.55 0.47 11.58 16 10 N -0.69 -29.76 6.48 -522.00 -3.38 -33.14 16 11 C 0.09 3.23 5.81 85.56 0.50 3.72 16 12 C -0.11 -2.96 5.39 -19.87 -0.11 -3.06 16 13 C -0.06 -1.30 9.70 22.27 0.22 -1.09 16 14 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 15 C -0.03 -0.48 9.52 22.27 0.21 -0.27 16 16 C -0.68 -15.03 5.97 22.27 0.13 -14.90 16 17 S 2.73 56.25 6.28 -56.49 -0.35 55.89 16 18 N -1.23 -13.11 9.52 37.02 0.35 -12.75 16 19 O -0.99 -24.56 17.28 -128.00 -2.21 -26.78 16 20 O -1.00 -29.95 17.28 -128.00 -2.21 -32.16 16 21 C -0.02 -0.52 9.18 22.27 0.20 -0.31 16 22 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 23 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 24 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.34 13.74 8.72 -89.69 -0.78 12.95 16 26 H 0.04 1.30 8.08 -2.39 -0.02 1.28 16 27 H 0.07 2.48 8.09 -2.38 -0.02 2.46 16 28 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 30 H 0.16 2.24 7.62 -2.91 -0.02 2.22 16 31 H 0.43 2.81 8.96 -96.74 -0.87 1.94 16 32 H 0.43 2.81 8.96 -96.75 -0.87 1.95 16 33 H 0.13 3.79 7.61 -2.91 -0.02 3.77 16 Total: -1.00 -77.78 303.41 -4.31 -82.09 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -1.36 Total: 12.69 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 2.55 Total: -36.58 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -2.74 Total: -101.86 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -4.42 Total: -58.93 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 56.25 SS G_CDS: -0.35 Total: 55.89 kcal Total: -77.78 -4.31 -82.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578860055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.761 kcal (2) G-P(sol) polarization free energy of solvation -77.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds