Wall clock time and date at job start Mon Mar 30 2020 01:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47105 * 2 1 4 4 H 1.08995 * 109.47077 * 305.00427 * 3 2 1 5 5 C 1.50694 * 109.47039 * 184.99877 * 3 2 1 6 6 H 1.07994 * 120.00280 * 240.00036 * 5 3 2 7 7 C 1.37879 * 119.99960 * 60.00579 * 5 3 2 8 8 N 1.31519 * 120.00085 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00163 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46764 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47190 * 119.99518 * 9 7 5 12 12 H 1.48505 * 109.46924 * 239.99937 * 9 7 5 13 13 N 1.46506 * 109.46726 * 65.00050 * 3 2 1 14 14 C 1.34773 * 119.99968 * 274.99647 * 13 3 2 15 15 O 1.21646 * 120.00142 * 359.73141 * 14 13 3 16 16 C 1.47186 * 119.99999 * 180.02562 * 14 13 3 17 17 N 1.33580 * 122.48405 * 359.74847 * 16 14 13 18 18 C 1.29245 * 116.95446 * 179.97438 * 17 16 14 19 19 O 1.35495 * 125.18319 * 180.02562 * 18 17 16 20 20 S 1.76063 * 109.64035 * 0.02562 * 18 17 16 21 21 C 1.35085 * 122.48682 * 179.45963 * 16 14 13 22 22 C 1.50706 * 125.89156 * 359.97438 * 21 16 14 23 23 H 1.08996 * 109.47026 * 60.00175 * 1 2 3 24 24 H 1.09001 * 109.46546 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47121 * 299.99822 * 1 2 3 26 26 H 1.09006 * 109.47077 * 240.00206 * 2 1 3 27 27 H 1.08997 * 109.46937 * 120.00603 * 2 1 3 28 28 H 0.97002 * 119.99731 * 180.02562 * 8 7 5 29 29 H 0.96998 * 119.99507 * 95.00502 * 13 3 2 30 30 H 0.96699 * 113.99500 * 89.99969 * 19 18 17 31 31 H 1.09002 * 109.46953 * 89.99537 * 22 21 16 32 32 H 1.08997 * 109.46708 * 209.99569 * 22 21 16 33 33 H 1.09000 * 109.46870 * 329.99538 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8813 -1.3819 10 1 6.5987 1.5473 -0.1947 11 1 6.4971 -0.5175 -1.4630 12 1 6.3990 1.6168 -2.6103 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6643 1.3670 15 8 -0.3399 2.6365 0.4298 16 6 0.0460 3.3228 2.6245 17 7 0.8575 3.3832 3.6838 18 6 0.4069 3.9879 4.7334 19 8 1.0860 4.1463 5.8951 20 16 -1.2240 4.5746 4.4238 21 6 -1.1563 3.9158 2.7911 22 6 -2.2515 3.9979 1.7592 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8294 -0.0617 -2.9496 29 1 2.2720 2.1231 1.9978 30 1 1.6142 4.9554 5.9347 31 1 -2.9054 3.1308 1.8536 32 1 -2.8303 4.9082 1.9154 33 1 -1.8110 4.0139 0.7623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:47 Heat of formation + Delta-G solvation = -36.121593 kcal Electronic energy + Delta-G solvation = -18623.396866 eV Core-core repulsion = 15583.476129 eV Total energy + Delta-G solvation = -3039.920737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.24399 -38.62633 -37.15219 -35.11379 -32.52573 -31.94499 -30.92469 -27.73507 -26.49235 -24.18878 -23.13585 -22.04599 -19.78086 -19.28295 -18.79013 -17.98619 -16.78538 -15.97619 -15.49827 -15.19122 -14.82392 -14.31416 -13.83675 -13.65357 -13.34195 -12.72987 -12.61631 -12.52837 -11.94904 -11.93007 -11.63482 -11.48834 -11.23929 -10.93770 -10.82651 -10.29196 -10.17076 -9.84033 -9.61235 -9.42706 -9.08728 -9.01400 -8.74076 -8.49058 -7.80154 -6.11140 -4.19792 0.40495 0.87585 1.41419 2.10496 3.25342 3.33143 3.36047 3.38202 3.88699 4.15008 4.41108 4.81899 4.90774 5.19967 5.23499 5.63288 5.82525 5.86352 6.31201 6.40641 6.47522 6.66933 6.91794 7.06575 7.17803 7.33870 7.38805 7.44497 7.65076 7.76549 7.91425 8.18420 8.67543 8.77511 9.08852 9.47112 10.94351 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.005268 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.081134 B = 5314.239444 C = 6076.429258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.684 5.684 14 C 0.576 3.424 15 O -0.539 6.539 16 C 0.021 3.979 17 N -0.449 5.449 18 C 0.248 3.752 19 O -0.432 6.432 20 S 0.067 5.933 21 C -0.128 4.128 22 C -0.087 4.087 23 H 0.051 0.949 24 H 0.023 0.977 25 H 0.037 0.963 26 H 0.101 0.899 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.398 0.602 30 H 0.405 0.595 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 8.527 12.184 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.330 5.330 14 C 0.358 3.642 15 O -0.418 6.418 16 C -0.110 4.110 17 N -0.175 5.175 18 C -0.073 4.073 19 O -0.238 6.238 20 S 0.315 5.685 21 C -0.251 4.251 22 C -0.146 4.146 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.119 0.881 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.232 0.768 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.965 8.188 12.154 17.180 hybrid contribution 1.886 0.019 -0.208 1.897 sum -7.079 8.208 11.946 16.131 Atomic orbital electron populations 1.21841 0.98344 0.98137 1.01157 1.21943 0.92651 0.99667 1.02421 1.18889 0.94443 0.89284 0.80685 0.93016 1.21269 0.90633 1.38874 1.06272 0.91957 1.24874 0.98625 0.94781 0.95351 1.69905 1.35019 1.37740 1.09377 0.86398 0.84873 0.77782 0.78094 1.19725 1.20857 1.20893 1.46415 1.13969 1.53858 1.18788 1.16978 0.83442 0.79321 0.84483 1.90727 1.51828 1.60650 1.38612 1.20365 0.91019 1.05017 0.94575 1.66753 1.34844 1.16728 0.99132 1.24794 0.92385 1.00861 0.89211 1.84865 1.63004 1.47673 1.28288 1.85103 1.19046 1.55652 1.08730 1.26022 0.99784 1.02218 0.97046 1.20634 0.94179 1.02006 0.97778 0.93016 0.95789 0.94390 0.88124 0.94952 0.92631 0.76846 0.73683 0.89857 0.91513 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.49 7.57 -51.93 -0.39 1.09 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.67 11.29 55.43 0.63 -24.05 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -15.11 5.02 -56.08 -0.28 -15.39 16 14 C 0.58 11.93 6.35 -12.63 -0.08 11.85 16 15 O -0.54 -11.90 11.18 5.24 0.06 -11.84 16 16 C 0.02 0.37 6.67 -84.59 -0.56 -0.20 16 17 N -0.45 -7.36 10.01 -11.34 -0.11 -7.48 16 18 C 0.25 3.25 8.88 51.67 0.46 3.71 16 19 O -0.43 -4.43 13.64 -18.18 -0.25 -4.68 16 20 S 0.07 0.76 23.41 -107.50 -2.52 -1.76 16 21 C -0.13 -1.85 6.62 -35.43 -0.23 -2.08 16 22 C -0.09 -1.10 9.65 36.01 0.35 -0.75 16 23 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 26 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.40 8.36 8.02 -40.82 -0.33 8.04 16 30 H 0.41 1.92 9.06 45.56 0.41 2.34 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.12 1.74 5.97 -51.93 -0.31 1.43 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -30.61 292.48 -6.40 -37.01 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -2.86 Total: 7.71 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.45 Total: 0.30 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.23 Total: -46.91 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.19 Total: -16.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.52 Total: -1.76 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.61 -6.40 -37.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.885 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds