Wall clock time and date at job start Mon Mar 30 2020 01:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47105 * 2 1 4 4 H 1.08995 * 109.47077 * 305.00427 * 3 2 1 5 5 C 1.50694 * 109.47039 * 184.99877 * 3 2 1 6 6 H 1.07994 * 120.00280 * 240.00036 * 5 3 2 7 7 C 1.37879 * 119.99960 * 60.00579 * 5 3 2 8 8 N 1.31519 * 120.00085 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00163 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46764 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47190 * 119.99518 * 9 7 5 12 12 H 1.48505 * 109.46924 * 239.99937 * 9 7 5 13 13 N 1.46506 * 109.46726 * 65.00050 * 3 2 1 14 14 C 1.34773 * 119.99968 * 274.99647 * 13 3 2 15 15 O 1.21646 * 120.00142 * 359.73141 * 14 13 3 16 16 C 1.47186 * 119.99999 * 180.02562 * 14 13 3 17 17 N 1.33580 * 122.48405 * 359.74847 * 16 14 13 18 18 C 1.29245 * 116.95446 * 179.97438 * 17 16 14 19 19 O 1.35495 * 125.18319 * 180.02562 * 18 17 16 20 20 S 1.76063 * 109.64035 * 0.02562 * 18 17 16 21 21 C 1.35085 * 122.48682 * 179.45963 * 16 14 13 22 22 C 1.50706 * 125.89156 * 359.97438 * 21 16 14 23 23 H 1.08996 * 109.47026 * 60.00175 * 1 2 3 24 24 H 1.09001 * 109.46546 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47121 * 299.99822 * 1 2 3 26 26 H 1.09006 * 109.47077 * 240.00206 * 2 1 3 27 27 H 1.08997 * 109.46937 * 120.00603 * 2 1 3 28 28 H 0.97002 * 119.99731 * 180.02562 * 8 7 5 29 29 H 0.96998 * 119.99507 * 95.00502 * 13 3 2 30 30 H 0.96699 * 113.99500 * 89.99969 * 19 18 17 31 31 H 1.09002 * 109.46953 * 89.99537 * 22 21 16 32 32 H 1.08997 * 109.46708 * 209.99569 * 22 21 16 33 33 H 1.09000 * 109.46870 * 329.99538 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8813 -1.3819 10 1 6.5987 1.5473 -0.1947 11 1 6.4971 -0.5175 -1.4630 12 1 6.3990 1.6168 -2.6103 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6643 1.3670 15 8 -0.3399 2.6365 0.4298 16 6 0.0460 3.3228 2.6245 17 7 0.8575 3.3832 3.6838 18 6 0.4069 3.9879 4.7334 19 8 1.0860 4.1463 5.8951 20 16 -1.2240 4.5746 4.4238 21 6 -1.1563 3.9158 2.7911 22 6 -2.2515 3.9979 1.7592 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8294 -0.0617 -2.9496 29 1 2.2720 2.1231 1.9978 30 1 1.6142 4.9554 5.9347 31 1 -2.9054 3.1308 1.8536 32 1 -2.8303 4.9082 1.9154 33 1 -1.8110 4.0139 0.7623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585089466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:46 Heat of formation + Delta-G solvation = -61.268933 kcal Electronic energy + Delta-G solvation = -18624.487336 eV Core-core repulsion = 15583.476129 eV Total energy + Delta-G solvation = -3041.011208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53766 -39.95851 -38.21508 -36.93481 -34.36607 -33.15232 -32.79165 -29.39819 -28.00999 -25.46773 -24.81421 -23.49098 -21.54615 -20.86923 -19.82103 -19.17743 -18.43311 -17.31956 -17.06777 -16.80797 -16.28507 -16.11021 -15.10839 -14.87291 -14.70320 -14.59908 -13.90369 -13.72620 -13.47515 -13.38615 -13.18762 -12.95877 -12.82514 -12.72077 -12.67139 -12.14708 -12.06904 -11.59107 -11.07278 -10.95546 -10.59421 -10.50897 -10.39614 -9.90234 -9.55802 -8.17096 -6.33828 -0.64538 -0.11018 0.33541 0.87638 1.43140 1.44247 1.56344 2.29443 2.39618 2.42421 2.74656 3.12228 3.71896 3.87189 4.01527 4.49602 4.57197 4.61394 4.68328 4.75795 4.82102 5.06406 5.24822 5.26011 5.43048 5.55228 5.61149 5.78052 5.88060 6.15289 6.21305 6.40756 6.72224 6.94978 7.30055 7.47418 8.88534 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.005268 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.081134 B = 5314.239444 C = 6076.429258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.280 1.280 13 N -0.690 5.690 14 C 0.573 3.427 15 O -0.561 6.561 16 C -0.009 4.009 17 N -0.487 5.487 18 C 0.248 3.752 19 O -0.433 6.433 20 S 0.165 5.835 21 C -0.135 4.135 22 C -0.087 4.087 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.430 0.570 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 9.596 14.408 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.206 1.206 13 N -0.337 5.337 14 C 0.357 3.643 15 O -0.442 6.442 16 C -0.139 4.139 17 N -0.213 5.213 18 C -0.073 4.073 19 O -0.244 6.244 20 S 0.414 5.586 21 C -0.259 4.259 22 C -0.146 4.146 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.292 0.708 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.377 9.295 14.420 19.552 hybrid contribution 1.913 -0.203 -0.777 2.075 sum -7.464 9.092 13.643 18.014 Atomic orbital electron populations 1.21669 0.96621 0.99313 1.00389 1.21792 0.94124 0.98936 1.01168 1.18484 0.93789 0.89333 0.80922 0.97363 1.21556 0.91451 1.39135 1.06656 0.91789 1.25716 1.03262 0.94241 0.94894 1.70036 1.36919 1.38215 1.09834 0.85340 0.79180 0.77933 0.78136 1.18969 1.20240 1.20615 1.46208 1.15034 1.54722 1.17738 1.17450 0.82452 0.78604 0.85745 1.90709 1.52186 1.61291 1.39992 1.19775 0.92765 1.07513 0.93855 1.66650 1.35910 1.18825 0.99932 1.25001 0.93696 0.99696 0.88878 1.84827 1.63402 1.49543 1.26600 1.84780 1.16243 1.53025 1.04591 1.26369 0.98976 1.00807 0.99706 1.20651 0.93947 1.04022 0.95945 0.94650 0.93506 0.94192 0.90545 0.94747 0.92455 0.76338 0.70750 0.89104 0.88116 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.52 71.98 0.61 -4.98 16 2 C -0.12 -6.16 5.45 30.60 0.17 -6.00 16 3 C 0.28 14.75 2.24 44.24 0.10 14.85 16 4 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 5 C -0.55 -30.25 8.73 25.60 0.22 -30.02 16 6 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -52.35 11.29 21.45 0.24 -52.11 16 9 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.69 -31.61 5.02 -449.59 -2.26 -33.87 16 14 C 0.57 24.48 6.35 86.59 0.55 25.03 16 15 O -0.56 -25.83 11.18 -4.18 -0.05 -25.88 16 16 C -0.01 -0.30 6.67 40.50 0.27 -0.03 16 17 N -0.49 -15.52 10.01 -304.24 -3.05 -18.56 16 18 C 0.25 5.88 8.88 130.62 1.16 7.04 16 19 O -0.43 -7.59 13.64 -87.96 -1.20 -8.79 16 20 S 0.16 3.13 23.41 -56.49 -1.32 1.81 16 21 C -0.13 -3.66 6.62 24.96 0.17 -3.50 16 22 C -0.09 -2.08 9.65 71.24 0.69 -1.39 16 23 H 0.03 1.69 7.85 -2.39 -0.02 1.67 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.78 5.65 -2.39 -0.01 1.76 16 26 H 0.08 4.27 5.95 -2.38 -0.01 4.26 16 27 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.40 17.46 8.02 -92.71 -0.74 16.71 16 30 H 0.43 2.68 9.06 -74.06 -0.67 2.01 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 2.64 5.97 -2.39 -0.01 2.63 16 Total: -1.00 -68.15 292.48 -1.46 -69.61 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.24 Total: 20.29 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 4.38 Total: 2.51 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -5.06 Total: -104.54 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -1.25 Total: -34.67 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.32 Total: 1.81 kcal Total: -68.15 -1.46 -69.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.338 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds