Wall clock time and date at job start Mon Mar 30 2020 01:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46968 * 119.99877 * 9 7 5 12 12 H 1.48491 * 109.47133 * 239.99928 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21641 * 119.99868 * 359.97438 * 14 13 3 16 16 C 1.47184 * 119.99617 * 179.97438 * 14 13 3 17 17 N 1.33575 * 122.49036 * 0.02562 * 16 14 13 18 18 C 1.29246 * 116.95883 * 179.97438 * 17 16 14 19 19 O 1.35495 * 125.18292 * 180.02562 * 18 17 16 20 20 S 1.76058 * 109.63926 * 0.02562 * 18 17 16 21 21 C 1.35088 * 122.48303 * 179.73447 * 16 14 13 22 22 C 1.50702 * 125.89160 * 0.02562 * 21 16 14 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 29 29 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 30 30 H 0.96703 * 113.99523 * 89.99797 * 19 18 17 31 31 H 1.09002 * 109.47203 * 90.00392 * 22 21 16 32 32 H 1.08998 * 109.46931 * 209.99942 * 22 21 16 33 33 H 1.08993 * 109.47005 * 330.00250 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1948 11 1 6.3989 1.6168 2.6103 12 1 6.4970 -0.5174 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3419 2.6318 -0.4317 16 6 0.0460 3.3228 -2.6246 17 7 0.8592 3.3870 -3.6823 18 6 0.4080 3.9904 -4.7325 19 8 1.0883 4.1513 -5.8932 20 16 -1.2252 4.5716 -4.4251 21 6 -1.1622 3.9019 -2.7966 22 6 -2.2648 3.9670 -1.7713 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0610 2.9499 29 1 2.2720 2.1231 -1.9978 30 1 0.9577 3.4337 -6.5282 31 1 -2.1537 4.8728 -1.1753 32 1 -3.2305 3.9808 -2.2767 33 1 -2.2077 3.0945 -1.1206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:51 Heat of formation + Delta-G solvation = -36.030272 kcal Electronic energy + Delta-G solvation = -18625.397852 eV Core-core repulsion = 15585.481075 eV Total energy + Delta-G solvation = -3039.916777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.24539 -38.62874 -37.15382 -35.11389 -32.52495 -31.94568 -30.93396 -27.73229 -26.49543 -24.18976 -23.13663 -22.04877 -19.78833 -19.28241 -18.79075 -17.98737 -16.79241 -15.96286 -15.46845 -15.27007 -14.77162 -14.30069 -13.83276 -13.68907 -13.32068 -12.79611 -12.66808 -12.44200 -11.94919 -11.92151 -11.64289 -11.48012 -11.24112 -10.93862 -10.83165 -10.29991 -10.17171 -9.84476 -9.61901 -9.42955 -9.07926 -9.01934 -8.73401 -8.48662 -7.80783 -6.10921 -4.19465 0.40507 0.87477 1.41390 2.10523 3.25823 3.33735 3.36729 3.38244 3.88274 4.15516 4.41329 4.81888 4.90688 5.20254 5.23468 5.63391 5.82547 5.86341 6.30764 6.39127 6.45969 6.65650 6.91685 7.04942 7.17061 7.33566 7.38188 7.44248 7.65031 7.76334 7.91553 8.18260 8.67537 8.77848 9.08911 9.47465 10.94602 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.005263 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.107846 B = 5318.798835 C = 6074.921259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.684 5.684 14 C 0.576 3.424 15 O -0.538 6.538 16 C 0.021 3.979 17 N -0.449 5.449 18 C 0.248 3.752 19 O -0.432 6.432 20 S 0.067 5.933 21 C -0.128 4.128 22 C -0.087 4.087 23 H 0.023 0.977 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.398 0.602 30 H 0.405 0.595 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 5.443 -13.390 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.330 5.330 14 C 0.358 3.642 15 O -0.418 6.418 16 C -0.110 4.110 17 N -0.175 5.175 18 C -0.073 4.073 19 O -0.238 6.238 20 S 0.315 5.685 21 C -0.251 4.251 22 C -0.146 4.146 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.232 0.768 30 H 0.263 0.737 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.847 6.147 -12.953 17.394 hybrid contribution 1.557 -0.739 -0.087 1.726 sum -8.290 5.408 -13.040 16.371 Atomic orbital electron populations 1.21845 0.98362 0.98111 1.01160 1.21939 0.92633 0.99659 1.02415 1.18891 0.94458 0.89267 0.80702 0.93026 1.21279 0.90639 1.38830 1.06306 0.91942 1.24872 0.98633 0.94775 0.95342 1.69900 1.35026 1.37782 1.09358 0.86397 0.84870 0.77756 0.78134 1.19704 1.20884 1.20866 1.46417 1.13936 1.53879 1.18795 1.16980 0.83503 0.79249 0.84497 1.90726 1.51401 1.61223 1.38457 1.20363 0.90749 1.04782 0.95079 1.66748 1.33736 1.17206 0.99766 1.24792 0.91001 1.00936 0.90529 1.84871 1.67770 1.48425 1.22732 1.85102 1.16246 1.57338 1.09834 1.26024 1.00203 1.00595 0.98250 1.20634 0.92358 1.06077 0.95540 0.95795 0.94402 0.93003 0.88121 0.94969 0.92635 0.76845 0.73716 0.89825 0.91524 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.08 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -15.11 5.02 -56.08 -0.28 -15.39 16 14 C 0.58 11.93 6.36 -12.62 -0.08 11.85 16 15 O -0.54 -11.90 11.16 5.24 0.06 -11.84 16 16 C 0.02 0.37 6.67 -84.60 -0.56 -0.20 16 17 N -0.45 -7.36 10.01 -11.34 -0.11 -7.48 16 18 C 0.25 3.25 8.88 51.67 0.46 3.71 16 19 O -0.43 -4.43 13.64 -18.18 -0.25 -4.67 16 20 S 0.07 0.76 23.41 -107.50 -2.52 -1.76 16 21 C -0.13 -1.85 6.62 -35.43 -0.23 -2.08 16 22 C -0.09 -1.10 9.65 36.01 0.35 -0.76 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 25 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 26 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.40 8.36 8.02 -40.82 -0.33 8.04 16 30 H 0.40 1.89 9.06 45.56 0.41 2.31 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.12 1.73 5.96 -51.93 -0.31 1.42 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -30.68 292.46 -6.40 -37.08 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -2.86 Total: 7.54 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.45 Total: 0.33 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.23 Total: -46.94 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.19 Total: -16.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.52 Total: -1.76 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.68 -6.40 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.045 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds