Wall clock time and date at job start Mon Mar 30 2020 01:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46968 * 119.99877 * 9 7 5 12 12 H 1.48491 * 109.47133 * 239.99928 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21641 * 119.99868 * 359.97438 * 14 13 3 16 16 C 1.47184 * 119.99617 * 179.97438 * 14 13 3 17 17 N 1.33575 * 122.49036 * 0.02562 * 16 14 13 18 18 C 1.29246 * 116.95883 * 179.97438 * 17 16 14 19 19 O 1.35495 * 125.18292 * 180.02562 * 18 17 16 20 20 S 1.76058 * 109.63926 * 0.02562 * 18 17 16 21 21 C 1.35088 * 122.48303 * 179.73447 * 16 14 13 22 22 C 1.50702 * 125.89160 * 0.02562 * 21 16 14 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 29 29 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 30 30 H 0.96703 * 113.99523 * 89.99797 * 19 18 17 31 31 H 1.09002 * 109.47203 * 90.00392 * 22 21 16 32 32 H 1.08998 * 109.46931 * 209.99942 * 22 21 16 33 33 H 1.08993 * 109.47005 * 330.00250 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1948 11 1 6.3989 1.6168 2.6103 12 1 6.4970 -0.5174 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3419 2.6318 -0.4317 16 6 0.0460 3.3228 -2.6246 17 7 0.8592 3.3870 -3.6823 18 6 0.4080 3.9904 -4.7325 19 8 1.0883 4.1513 -5.8932 20 16 -1.2252 4.5716 -4.4251 21 6 -1.1622 3.9019 -2.7966 22 6 -2.2648 3.9670 -1.7713 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0610 2.9499 29 1 2.2720 2.1231 -1.9978 30 1 0.9577 3.4337 -6.5282 31 1 -2.1537 4.8728 -1.1753 32 1 -3.2305 3.9808 -2.2767 33 1 -2.2077 3.0945 -1.1206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585089467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:50 Heat of formation + Delta-G solvation = -61.260899 kcal Electronic energy + Delta-G solvation = -18626.491934 eV Core-core repulsion = 15585.481075 eV Total energy + Delta-G solvation = -3041.010859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53883 -39.95967 -38.21567 -36.93342 -34.36803 -33.15449 -32.78700 -29.39271 -28.01261 -25.47102 -24.80855 -23.48836 -21.54462 -20.86885 -19.82085 -19.17458 -18.45055 -17.28019 -16.98708 -16.95257 -16.31612 -16.00537 -15.16094 -14.85432 -14.72014 -14.60069 -13.94896 -13.57107 -13.56137 -13.38329 -13.18205 -12.95086 -12.83820 -12.70995 -12.68288 -12.15530 -12.06192 -11.58710 -11.07069 -10.95890 -10.59744 -10.49811 -10.39341 -9.89795 -9.56464 -8.17437 -6.34081 -0.64483 -0.11043 0.33580 0.87682 1.42659 1.43947 1.56037 2.31199 2.35922 2.44092 2.74528 3.11876 3.71953 3.87284 4.01588 4.50331 4.58067 4.61610 4.68137 4.76431 4.82347 5.06626 5.25160 5.26493 5.43851 5.55593 5.61138 5.78486 5.88338 6.15670 6.21506 6.41067 6.72001 6.94916 7.29881 7.47316 8.88152 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.005263 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.107846 B = 5318.798835 C = 6074.921259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.690 5.690 14 C 0.573 3.427 15 O -0.561 6.561 16 C -0.009 4.009 17 N -0.487 5.487 18 C 0.248 3.752 19 O -0.433 6.433 20 S 0.165 5.835 21 C -0.135 4.135 22 C -0.087 4.087 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.430 0.570 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 6.300 -15.687 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.337 5.337 14 C 0.357 3.643 15 O -0.442 6.442 16 C -0.139 4.139 17 N -0.213 5.213 18 C -0.073 4.073 19 O -0.244 6.244 20 S 0.414 5.586 21 C -0.259 4.259 22 C -0.146 4.146 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.237 0.763 30 H 0.293 0.707 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.376 7.008 -15.305 19.774 hybrid contribution 1.611 -0.911 0.499 1.917 sum -8.765 6.096 -14.807 18.255 Atomic orbital electron populations 1.21672 0.96557 0.99345 1.00416 1.21779 0.94172 0.98767 1.01217 1.18488 0.93732 0.89435 0.80897 0.97498 1.21561 0.91508 1.39116 1.06677 0.91899 1.25705 1.03223 0.94242 0.94890 1.70030 1.36899 1.38223 1.09800 0.85349 0.79235 0.77973 0.78093 1.19079 1.20670 1.20093 1.46210 1.14992 1.54759 1.17739 1.17452 0.82503 0.78535 0.85770 1.90708 1.51764 1.61843 1.39853 1.19774 0.92415 1.07363 0.94350 1.66645 1.34844 1.19364 1.00472 1.24998 0.92070 0.99642 0.90560 1.84832 1.67672 1.49760 1.22115 1.84780 1.13407 1.54791 1.05663 1.26370 0.99353 0.99396 1.00735 1.20653 0.93570 1.05020 0.95354 0.93429 0.94051 0.94763 0.90603 0.94594 0.92442 0.76339 0.70738 0.89278 0.88051 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.75 2.24 44.25 0.10 14.85 16 4 H 0.01 0.44 7.58 -2.39 -0.02 0.42 16 5 C -0.55 -30.42 8.73 25.60 0.22 -30.20 16 6 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 1.09 5.29 84.66 0.45 1.53 16 8 N -0.91 -52.37 11.29 21.45 0.24 -52.13 16 9 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.69 -31.62 5.02 -449.57 -2.26 -33.87 16 14 C 0.57 24.47 6.36 86.59 0.55 25.02 16 15 O -0.56 -25.82 11.16 -4.16 -0.05 -25.86 16 16 C -0.01 -0.30 6.67 40.50 0.27 -0.03 16 17 N -0.49 -15.52 10.01 -304.24 -3.05 -18.56 16 18 C 0.25 5.88 8.88 130.62 1.16 7.04 16 19 O -0.43 -7.59 13.64 -87.96 -1.20 -8.79 16 20 S 0.16 3.13 23.41 -56.49 -1.32 1.81 16 21 C -0.13 -3.66 6.62 24.96 0.17 -3.50 16 22 C -0.09 -2.08 9.65 71.24 0.69 -1.40 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.80 5.64 -2.39 -0.01 1.79 16 25 H 0.03 1.62 7.84 -2.38 -0.02 1.60 16 26 H 0.08 4.21 5.95 -2.39 -0.01 4.20 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.40 17.46 8.02 -92.71 -0.74 16.72 16 30 H 0.43 2.59 9.06 -74.06 -0.67 1.92 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.09 2.65 5.96 -2.39 -0.01 2.64 16 Total: -1.00 -68.37 292.46 -1.46 -69.83 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.24 Total: 19.82 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 4.38 Total: 2.54 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -5.06 Total: -104.56 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.25 Total: -34.65 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.32 Total: 1.81 kcal Total: -68.37 -1.46 -69.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.571 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds