Wall clock time and date at job start Mon Mar 30 2020 01:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47659 * 2 1 4 4 C 1.50709 * 109.47083 * 240.00430 * 2 1 3 5 5 H 1.07996 * 119.99687 * 240.00497 * 4 2 1 6 6 C 1.37875 * 119.99877 * 59.99623 * 4 2 1 7 7 N 1.31510 * 120.00284 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99615 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47273 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46947 * 120.00429 * 8 6 4 11 11 H 1.48503 * 109.46780 * 240.00170 * 8 6 4 12 12 C 1.52999 * 109.47178 * 120.00363 * 2 1 3 13 13 N 1.46490 * 109.47369 * 299.99799 * 12 2 1 14 14 C 1.39610 * 120.00405 * 180.02562 * 13 12 2 15 15 S 1.75883 * 125.23930 * 359.97225 * 14 13 12 16 16 C 1.75854 * 91.02816 * 180.02562 * 15 14 13 17 17 C 1.33220 * 109.74653 * 359.75252 * 16 15 14 18 18 C 1.34100 * 125.24149 * 180.02562 * 14 13 12 19 19 N 1.48123 * 122.63850 * 359.94832 * 18 14 13 20 20 O 1.21803 * 119.99882 * 180.02562 * 19 18 14 21 21 O 1.21799 * 119.99915 * 359.73166 * 19 18 14 22 22 H 1.09004 * 109.46835 * 300.00121 * 1 2 3 23 23 H 1.09000 * 109.46913 * 59.98985 * 1 2 3 24 24 H 1.08994 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47221 * 180.02562 * 3 2 1 26 26 H 1.08991 * 109.47208 * 300.00527 * 3 2 1 27 27 H 1.09003 * 109.46382 * 60.00240 * 3 2 1 28 28 H 0.97001 * 120.00228 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46923 * 179.97438 * 12 2 1 30 30 H 1.09001 * 109.47390 * 60.00154 * 12 2 1 31 31 H 0.97006 * 120.00076 * 359.97438 * 13 12 2 32 32 H 1.08002 * 125.12254 * 180.02562 * 16 15 14 33 33 H 1.08009 * 122.50969 * 180.22411 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5865 -4.8162 11 1 3.1465 -0.1871 -4.8165 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0309 2.4454 14 6 1.8895 -0.5076 3.7133 15 16 2.8879 -1.9196 4.0339 16 6 2.7208 -1.6832 5.7685 17 6 1.9684 -0.6098 6.0061 18 6 1.5017 0.0400 4.8744 19 7 0.6475 1.2482 4.9421 20 8 0.3241 1.7056 6.0236 21 8 0.2728 1.7873 3.9162 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9562 0.8901 28 1 0.7093 1.1619 -3.4844 29 1 3.1300 -0.7217 1.2489 30 1 1.6767 -1.7490 1.2492 31 1 0.9944 0.7581 2.3565 32 1 3.1651 -2.3109 6.5268 33 1 1.7362 -0.2734 7.0058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591175922.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:39 Heat of formation + Delta-G solvation = 20.151458 kcal Electronic energy + Delta-G solvation = -18723.017201 eV Core-core repulsion = 15685.536646 eV Total energy + Delta-G solvation = -3037.480554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74051 -38.44338 -37.04203 -36.12962 -34.10640 -31.34875 -29.18837 -26.48412 -25.86188 -25.63282 -24.40000 -23.15066 -20.65508 -19.09949 -18.66069 -18.35806 -17.16581 -16.90652 -16.04931 -15.35867 -14.65235 -14.55571 -14.45073 -14.30372 -13.09079 -13.04062 -12.56992 -12.39354 -11.67411 -11.45752 -11.33870 -11.16858 -11.09556 -10.82183 -10.78585 -10.63070 -10.62728 -10.31950 -10.24760 -9.73662 -9.62112 -8.96548 -8.95967 -8.52731 -7.68653 -6.15411 -4.28255 0.50605 0.73130 1.17946 1.60826 2.19955 2.54187 3.18246 3.24783 3.28109 3.33783 4.27878 4.69607 4.87677 5.11383 5.47617 5.62595 5.79587 5.82820 5.83713 6.14485 6.47359 6.71221 6.71700 6.73509 6.85078 6.87046 7.18169 7.39417 7.49869 7.56797 7.85612 7.97516 8.08502 8.20334 8.71424 9.38842 10.86020 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.005309 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.780628 B = 5272.458849 C = 6078.171414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.061 3.939 3 C -0.137 4.137 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.108 3.892 13 N -0.645 5.645 14 C 0.207 3.793 15 S 0.171 5.829 16 C -0.262 4.262 17 C -0.050 4.050 18 C -0.204 4.204 19 N 0.078 4.922 20 O -0.188 6.188 21 O -0.212 6.212 22 H 0.011 0.989 23 H 0.090 0.910 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.428 0.572 32 H 0.178 0.822 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -5.209 12.099 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 C -0.194 4.194 4 C -0.552 4.552 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.015 4.015 13 N -0.276 5.276 14 C -0.033 4.033 15 S 0.420 5.580 16 C -0.398 4.398 17 C -0.079 4.079 18 C -0.306 4.306 19 N 0.581 4.419 20 O -0.398 6.398 21 O -0.412 6.412 22 H 0.030 0.970 23 H 0.109 0.891 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.275 0.725 32 H 0.195 0.805 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.686 -6.626 10.776 13.490 hybrid contribution -0.807 1.145 0.068 1.402 sum 3.879 -5.481 10.844 12.754 Atomic orbital electron populations 1.21886 0.97269 0.99394 1.00877 1.18343 0.93213 0.92935 0.89481 1.21886 0.98601 0.98066 1.00880 1.20907 1.32270 1.12397 0.89627 0.92263 1.24885 0.94654 0.94846 0.98974 1.69810 1.36030 1.22442 1.23496 0.86476 0.78680 0.79654 0.82832 1.19759 1.20926 1.20921 1.22406 0.98711 0.96457 0.83879 1.46064 1.49713 1.31037 1.00805 1.22607 0.94957 0.96896 0.88797 1.84765 1.49308 1.22423 1.01509 1.24944 1.11585 1.05132 0.98167 1.19209 0.96268 0.93991 0.98390 1.19441 1.17638 0.99124 0.94380 1.42869 0.98497 1.00496 1.00005 1.94457 1.61146 1.67123 1.17062 1.94404 1.59902 1.62178 1.24688 0.97000 0.89105 0.95281 0.95278 0.89107 0.96987 0.92748 0.91435 0.91437 0.72461 0.80502 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.08 37.16 0.30 -2.75 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 3 C -0.14 -3.05 8.08 37.16 0.30 -2.75 16 4 C -0.51 -12.54 8.01 -34.44 -0.28 -12.82 16 5 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -22.81 9.35 55.43 0.52 -22.29 16 8 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.11 1.98 4.46 -4.05 -0.02 1.96 16 13 N -0.65 -11.32 5.08 -59.63 -0.30 -11.62 16 14 C 0.21 3.24 7.18 -15.46 -0.11 3.13 16 15 S 0.17 2.03 22.57 -107.50 -2.43 -0.40 16 16 C -0.26 -2.70 11.21 28.98 0.32 -2.38 16 17 C -0.05 -0.62 9.71 -41.20 -0.40 -1.02 16 18 C -0.20 -3.24 6.83 -81.22 -0.55 -3.79 16 19 N 0.08 1.43 4.46 33.34 0.15 1.57 16 20 O -0.19 -3.41 18.80 -29.46 -0.55 -3.97 16 21 O -0.21 -4.20 16.45 -29.46 -0.48 -4.69 16 22 H 0.01 0.23 6.86 -51.93 -0.36 -0.12 16 23 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 27 H 0.01 0.24 6.86 -51.93 -0.36 -0.12 16 28 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.43 8.11 3.54 -40.82 -0.14 7.96 16 32 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.16 1.69 7.94 -52.48 -0.42 1.27 16 LS Contribution 290.80 15.07 4.38 4.38 Total: -1.00 -26.37 290.80 -7.90 -34.28 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.56 Total: 5.57 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.60 Total: -17.53 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.36 Total: -32.34 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -1.04 Total: -8.66 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.43 Total: -0.40 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.37 -7.90 -34.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591175922.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.429 kcal (2) G-P(sol) polarization free energy of solvation -26.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds