Wall clock time and date at job start Mon Mar 30 2020 01:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47659 * 2 1 4 4 C 1.50709 * 109.47083 * 240.00430 * 2 1 3 5 5 H 1.07996 * 119.99687 * 240.00497 * 4 2 1 6 6 C 1.37875 * 119.99877 * 59.99623 * 4 2 1 7 7 N 1.31510 * 120.00284 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99615 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47273 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46947 * 120.00429 * 8 6 4 11 11 H 1.48503 * 109.46780 * 240.00170 * 8 6 4 12 12 C 1.52999 * 109.47178 * 120.00363 * 2 1 3 13 13 N 1.46490 * 109.47369 * 299.99799 * 12 2 1 14 14 C 1.39610 * 120.00405 * 180.02562 * 13 12 2 15 15 S 1.75883 * 125.23930 * 359.97225 * 14 13 12 16 16 C 1.75854 * 91.02816 * 180.02562 * 15 14 13 17 17 C 1.33220 * 109.74653 * 359.75252 * 16 15 14 18 18 C 1.34100 * 125.24149 * 180.02562 * 14 13 12 19 19 N 1.48123 * 122.63850 * 359.94832 * 18 14 13 20 20 O 1.21803 * 119.99882 * 180.02562 * 19 18 14 21 21 O 1.21799 * 119.99915 * 359.73166 * 19 18 14 22 22 H 1.09004 * 109.46835 * 300.00121 * 1 2 3 23 23 H 1.09000 * 109.46913 * 59.98985 * 1 2 3 24 24 H 1.08994 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47221 * 180.02562 * 3 2 1 26 26 H 1.08991 * 109.47208 * 300.00527 * 3 2 1 27 27 H 1.09003 * 109.46382 * 60.00240 * 3 2 1 28 28 H 0.97001 * 120.00228 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46923 * 179.97438 * 12 2 1 30 30 H 1.09001 * 109.47390 * 60.00154 * 12 2 1 31 31 H 0.97006 * 120.00076 * 359.97438 * 13 12 2 32 32 H 1.08002 * 125.12254 * 180.02562 * 16 15 14 33 33 H 1.08009 * 122.50969 * 180.22411 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5865 -4.8162 11 1 3.1465 -0.1871 -4.8165 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0309 2.4454 14 6 1.8895 -0.5076 3.7133 15 16 2.8879 -1.9196 4.0339 16 6 2.7208 -1.6832 5.7685 17 6 1.9684 -0.6098 6.0061 18 6 1.5017 0.0400 4.8744 19 7 0.6475 1.2482 4.9421 20 8 0.3241 1.7056 6.0236 21 8 0.2728 1.7873 3.9162 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9562 0.8901 28 1 0.7093 1.1619 -3.4844 29 1 3.1300 -0.7217 1.2489 30 1 1.6767 -1.7490 1.2492 31 1 0.9944 0.7581 2.3565 32 1 3.1651 -2.3109 6.5268 33 1 1.7362 -0.2734 7.0058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591175922.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:39 Heat of formation + Delta-G solvation = 6.697338 kcal Electronic energy + Delta-G solvation = -18723.600615 eV Core-core repulsion = 15685.536646 eV Total energy + Delta-G solvation = -3038.063969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.06957 -39.73190 -38.40799 -37.53782 -35.59684 -33.07042 -30.42446 -27.89076 -27.68687 -27.40949 -25.85603 -24.26993 -21.87234 -20.72609 -19.90977 -19.70504 -18.50810 -18.07137 -17.84624 -16.88007 -16.11546 -15.89945 -15.79378 -15.24751 -14.74183 -14.40358 -14.22698 -13.52497 -13.34631 -13.18090 -12.82449 -12.65332 -12.56354 -12.43815 -12.41020 -12.26369 -12.14655 -11.87006 -11.71352 -11.33570 -11.30040 -10.78271 -10.43336 -9.97670 -8.83313 -8.04570 -6.22673 -0.83243 -0.35715 0.11494 0.64197 1.00771 1.43502 1.43551 1.47855 1.56198 2.02580 2.46292 3.20378 3.53881 3.93197 4.13246 4.30717 4.54932 4.61732 4.75707 4.86466 4.94283 4.94568 5.00483 5.06782 5.29151 5.42073 5.54916 5.58068 5.64493 6.00071 6.04619 6.18094 6.34405 6.66830 6.83724 7.46785 8.95311 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.005309 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.780628 B = 5272.458849 C = 6078.171414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.053 3.947 3 C -0.126 4.126 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.951 3.049 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.286 1.286 12 C 0.123 3.877 13 N -0.660 5.660 14 C 0.178 3.822 15 S 0.218 5.782 16 C -0.224 4.224 17 C -0.076 4.076 18 C -0.205 4.205 19 N 0.076 4.924 20 O -0.187 6.187 21 O -0.263 6.263 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.259 0.741 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.419 0.581 32 H 0.223 0.777 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -7.540 13.830 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 C -0.184 4.184 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.778 3.222 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.213 1.213 12 C 0.001 3.999 13 N -0.292 5.292 14 C -0.060 4.060 15 S 0.468 5.532 16 C -0.359 4.359 17 C -0.105 4.105 18 C -0.309 4.309 19 N 0.572 4.428 20 O -0.399 6.399 21 O -0.451 6.451 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.239 0.761 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.328 -8.950 12.475 16.607 hybrid contribution -1.244 1.762 -0.307 2.179 sum 5.084 -7.188 12.168 15.019 Atomic orbital electron populations 1.21733 0.97862 0.99005 0.99813 1.18327 0.92771 0.92798 0.90847 1.21733 0.98430 0.98440 0.99816 1.21249 1.31872 1.12438 0.90548 0.91859 1.25566 0.95041 0.95492 1.01508 1.69957 1.37085 1.23597 1.23652 0.85604 0.77960 0.78790 0.79829 1.18814 1.21266 1.21255 1.22050 0.98922 0.96146 0.82816 1.45823 1.50804 1.31245 1.01345 1.23057 0.96281 0.98750 0.87885 1.84741 1.46778 1.19318 1.02340 1.25550 1.08517 1.03606 0.98238 1.19416 0.97875 0.95038 0.98137 1.19959 1.16994 0.97991 0.95919 1.43265 0.98713 1.01226 0.99576 1.94412 1.61029 1.67511 1.16964 1.94404 1.61920 1.63748 1.25004 0.96258 0.91882 0.95200 0.95201 0.91885 0.96247 0.93110 0.90683 0.90684 0.73633 0.76085 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.08 71.98 0.58 -5.18 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 3 C -0.13 -5.76 8.08 71.98 0.58 -5.18 16 4 C -0.52 -25.37 8.01 25.60 0.21 -25.16 16 5 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 6 C 0.02 1.20 5.15 84.65 0.44 1.63 16 7 N -0.90 -47.98 9.35 21.45 0.20 -47.78 16 8 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 10 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.12 4.40 4.46 86.38 0.39 4.79 16 13 N -0.66 -22.86 5.08 -342.58 -1.74 -24.60 16 14 C 0.18 5.26 7.18 82.51 0.59 5.85 16 15 S 0.22 4.34 22.57 -56.49 -1.27 3.06 16 16 C -0.22 -3.47 11.21 66.69 0.75 -2.72 16 17 C -0.08 -1.66 9.71 21.22 0.21 -1.45 16 18 C -0.21 -6.21 6.83 35.49 0.24 -5.97 16 19 N 0.08 2.79 4.46 -48.45 -0.22 2.58 16 20 O -0.19 -6.74 18.80 18.88 0.35 -6.38 16 21 O -0.26 -10.77 16.45 18.89 0.31 -10.46 16 22 H 0.02 0.81 6.86 -2.38 -0.02 0.79 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 27 H 0.02 0.81 6.86 -2.39 -0.02 0.80 16 28 H 0.26 13.32 8.31 -92.71 -0.77 12.54 16 29 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.42 16.16 3.54 -92.70 -0.33 15.84 16 32 H 0.22 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.17 3.16 7.94 -2.91 -0.02 3.13 16 Total: -1.00 -58.17 290.80 4.43 -53.74 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.81 Total: 18.47 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 3.95 Total: -31.07 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -1.75 Total: -69.80 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.67 Total: -16.84 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.27 Total: 3.06 kcal Total: -58.17 4.43 -53.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591175922.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.439 kcal (2) G-P(sol) polarization free energy of solvation -58.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds