Wall clock time and date at job start Mon Mar 30 2020 01:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47152 * 2 1 4 4 C 1.50698 * 109.47226 * 239.99431 * 2 1 3 5 5 H 1.07993 * 120.00348 * 241.34654 * 4 2 1 6 6 C 1.37877 * 119.99600 * 61.35191 * 4 2 1 7 7 N 1.31520 * 119.99677 * 193.97460 * 6 4 2 8 8 Si 1.86795 * 120.00212 * 13.97313 * 6 4 2 9 9 H 1.48506 * 109.47304 * 84.55118 * 8 6 4 10 10 H 1.48506 * 109.47437 * 204.54726 * 8 6 4 11 11 H 1.48498 * 109.47598 * 324.54925 * 8 6 4 12 12 C 1.52998 * 109.46635 * 119.99580 * 2 1 3 13 13 N 1.46500 * 109.47650 * 299.99971 * 12 2 1 14 14 C 1.39616 * 120.00253 * 180.02562 * 13 12 2 15 15 C 1.34099 * 125.23876 * 180.02562 * 14 13 12 16 16 C 1.38584 * 114.72122 * 180.02562 * 15 14 13 17 17 C 1.33223 * 114.98311 * 0.02562 * 16 15 14 18 18 N 1.48182 * 125.12851 * 179.97438 * 17 16 15 19 19 O 1.21799 * 119.99737 * 0.02562 * 18 17 16 20 20 O 1.21799 * 120.00199 * 180.02562 * 18 17 16 21 21 S 1.75867 * 109.74480 * 359.73469 * 17 16 15 22 22 H 1.08999 * 109.46929 * 309.37531 * 1 2 3 23 23 H 1.08995 * 109.46492 * 69.36679 * 1 2 3 24 24 H 1.08994 * 109.47069 * 189.37063 * 1 2 3 25 25 H 1.08994 * 109.47113 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46734 * 299.99856 * 3 2 1 27 27 H 1.09004 * 109.47031 * 59.99616 * 3 2 1 28 28 H 0.97004 * 119.99707 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47368 * 60.00557 * 12 2 1 30 30 H 1.09006 * 109.47170 * 180.02562 * 12 2 1 31 31 H 0.97000 * 119.99640 * 359.97438 * 13 12 2 32 32 H 1.08003 * 122.63880 * 359.97434 * 15 14 13 33 33 H 1.07999 * 122.50531 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6011 -1.1314 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9728 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2472 1.5864 -3.9289 11 1 0.1418 1.8043 -1.5160 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8893 -0.5072 3.7136 15 6 1.5015 0.0405 4.8746 16 6 1.9642 -0.6119 6.0063 17 6 2.7227 -1.6811 5.7688 18 7 3.3335 -2.5413 6.8094 19 8 3.1558 -2.2907 7.9880 20 8 4.0132 -3.4989 6.4861 21 16 2.8839 -1.9218 4.0342 22 1 -0.3633 0.6519 0.7944 23 1 -0.3632 0.3621 -0.9617 24 1 -0.3633 -1.0139 0.1673 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6975 -0.6302 -4.4268 29 1 1.6766 -1.7489 1.2494 30 1 3.1300 -0.7208 1.2496 31 1 0.9943 0.7584 2.3564 32 1 0.8783 0.9212 4.9237 33 1 1.7284 -0.2779 7.0059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591176515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:43 Heat of formation + Delta-G solvation = 42.451686 kcal Electronic energy + Delta-G solvation = -18096.616261 eV Core-core repulsion = 15060.102717 eV Total energy + Delta-G solvation = -3036.513544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81979 -38.84056 -37.37095 -36.33099 -34.32961 -31.90605 -29.70054 -26.78038 -26.60218 -25.47795 -24.31717 -23.42510 -20.78046 -19.52099 -19.37527 -18.35525 -17.39507 -16.57667 -16.31914 -16.06619 -15.21953 -14.93878 -14.76693 -13.70415 -13.40488 -13.17751 -12.96163 -12.64439 -12.42577 -12.28241 -11.89838 -11.45996 -11.33852 -11.05209 -11.04895 -10.74454 -10.65077 -10.50875 -10.34299 -10.21160 -9.39548 -8.93943 -8.88781 -8.68691 -7.81085 -6.35419 -4.35422 -0.04451 0.55453 1.35735 1.39607 1.82058 2.41703 3.07167 3.13766 3.14664 3.24054 4.16054 4.77036 4.94066 4.95838 5.27503 5.45003 5.52171 5.57653 5.73160 5.84956 5.96150 6.07354 6.18630 6.26503 6.40776 6.43662 6.54382 6.74639 6.88929 7.11644 7.25496 7.47670 7.78475 8.19337 8.66867 9.26938 10.77129 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044829 B = 0.004142 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.449504 B = 6758.766273 C = 7175.038280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 C -0.151 4.151 4 C -0.522 4.522 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.884 5.884 8 Si 0.884 3.116 9 H -0.284 1.284 10 H -0.302 1.302 11 H -0.250 1.250 12 C 0.123 3.877 13 N -0.676 5.676 14 C 0.182 3.818 15 C -0.290 4.290 16 C 0.029 3.971 17 C -0.251 4.251 18 N 0.081 4.919 19 O -0.179 6.179 20 O -0.183 6.183 21 S 0.230 5.770 22 H 0.022 0.978 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.267 0.733 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.413 0.587 32 H 0.154 0.846 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 3.722 13.326 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.033 3.967 3 C -0.208 4.208 4 C -0.560 4.560 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.520 5.520 8 Si 0.716 3.284 9 H -0.212 1.212 10 H -0.231 1.231 11 H -0.176 1.176 12 C 0.001 3.999 13 N -0.304 5.304 14 C -0.051 4.051 15 C -0.322 4.322 16 C -0.006 4.006 17 C -0.455 4.455 18 N 0.592 4.408 19 O -0.389 6.389 20 O -0.392 6.392 21 S 0.482 5.518 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.253 0.747 32 H 0.172 0.828 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.482 2.931 11.551 12.009 hybrid contribution -1.127 2.151 0.805 2.558 sum -2.609 5.081 12.356 13.613 Atomic orbital electron populations 1.22332 0.97500 1.00028 1.00393 1.18665 0.92757 0.92342 0.92959 1.22397 1.01385 0.98072 0.98937 1.20613 1.34933 1.12626 0.87818 0.90387 1.24950 0.94451 0.97289 0.95738 1.69932 1.47282 1.35898 0.98874 0.87307 0.79418 0.85372 0.76266 1.21150 1.23078 1.17622 1.22043 0.98952 0.96291 0.82615 1.45185 1.52736 1.31432 1.01054 1.22855 0.95581 0.96383 0.90247 1.19517 1.15365 1.08589 0.88693 1.19868 0.89538 0.89673 1.01487 1.25103 1.20960 1.06376 0.93027 1.42430 0.98116 0.99505 1.00728 1.94505 1.66319 1.77213 1.00888 1.94548 1.37419 1.19658 1.87609 1.84921 1.50103 1.23797 0.93004 0.95898 0.92104 0.93195 0.92542 0.93603 0.95169 0.92257 0.91051 0.91152 0.74712 0.82841 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 7.53 37.16 0.28 -2.32 16 2 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16 3 C -0.15 -2.70 7.52 37.16 0.28 -2.42 16 4 C -0.52 -12.65 8.62 -34.44 -0.30 -12.95 16 5 H 0.08 2.07 7.99 -52.49 -0.42 1.65 16 6 C 0.08 2.05 5.32 -17.82 -0.09 1.96 16 7 N -0.88 -24.82 13.96 55.43 0.77 -24.05 16 8 Si 0.88 19.56 22.79 -169.99 -3.87 15.69 16 9 H -0.28 -6.30 7.10 56.52 0.40 -5.89 16 10 H -0.30 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.25 -4.98 4.65 56.52 0.26 -4.72 16 12 C 0.12 1.94 4.45 -4.04 -0.02 1.92 16 13 N -0.68 -8.60 5.20 -59.63 -0.31 -8.91 16 14 C 0.18 2.21 7.24 -15.46 -0.11 2.10 16 15 C -0.29 -3.09 10.21 -40.91 -0.42 -3.51 16 16 C 0.03 0.33 9.80 -41.20 -0.40 -0.07 16 17 C -0.25 -3.44 7.50 -11.29 -0.08 -3.53 16 18 N 0.08 1.27 4.46 33.44 0.15 1.42 16 19 O -0.18 -2.81 18.93 -29.46 -0.56 -3.37 16 20 O -0.18 -3.05 19.08 -29.46 -0.56 -3.61 16 21 S 0.23 2.99 22.36 -107.50 -2.40 0.58 16 22 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 23 H 0.06 1.20 4.30 -51.93 -0.22 0.97 16 24 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.89 2.25 -51.93 -0.12 0.77 16 27 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.41 4.76 6.37 -40.82 -0.26 4.50 16 32 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.16 1.47 8.00 -52.49 -0.42 1.05 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -27.30 286.16 -6.97 -34.27 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.55 Total: 1.93 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.95 Total: -18.25 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.61 Total: -31.55 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -1.12 Total: -6.99 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -3.87 Total: 15.69 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.40 Total: 0.58 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.30 -6.97 -34.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591176515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.724 kcal (2) G-P(sol) polarization free energy of solvation -27.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds