Wall clock time and date at job start Mon Mar 30 2020 01:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47152 * 2 1 4 4 C 1.50698 * 109.47226 * 239.99431 * 2 1 3 5 5 H 1.07993 * 120.00348 * 241.34654 * 4 2 1 6 6 C 1.37877 * 119.99600 * 61.35191 * 4 2 1 7 7 N 1.31520 * 119.99677 * 193.97460 * 6 4 2 8 8 Si 1.86795 * 120.00212 * 13.97313 * 6 4 2 9 9 H 1.48506 * 109.47304 * 84.55118 * 8 6 4 10 10 H 1.48506 * 109.47437 * 204.54726 * 8 6 4 11 11 H 1.48498 * 109.47598 * 324.54925 * 8 6 4 12 12 C 1.52998 * 109.46635 * 119.99580 * 2 1 3 13 13 N 1.46500 * 109.47650 * 299.99971 * 12 2 1 14 14 C 1.39616 * 120.00253 * 180.02562 * 13 12 2 15 15 C 1.34099 * 125.23876 * 180.02562 * 14 13 12 16 16 C 1.38584 * 114.72122 * 180.02562 * 15 14 13 17 17 C 1.33223 * 114.98311 * 0.02562 * 16 15 14 18 18 N 1.48182 * 125.12851 * 179.97438 * 17 16 15 19 19 O 1.21799 * 119.99737 * 0.02562 * 18 17 16 20 20 O 1.21799 * 120.00199 * 180.02562 * 18 17 16 21 21 S 1.75867 * 109.74480 * 359.73469 * 17 16 15 22 22 H 1.08999 * 109.46929 * 309.37531 * 1 2 3 23 23 H 1.08995 * 109.46492 * 69.36679 * 1 2 3 24 24 H 1.08994 * 109.47069 * 189.37063 * 1 2 3 25 25 H 1.08994 * 109.47113 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46734 * 299.99856 * 3 2 1 27 27 H 1.09004 * 109.47031 * 59.99616 * 3 2 1 28 28 H 0.97004 * 119.99707 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47368 * 60.00557 * 12 2 1 30 30 H 1.09006 * 109.47170 * 180.02562 * 12 2 1 31 31 H 0.97000 * 119.99640 * 359.97438 * 13 12 2 32 32 H 1.08003 * 122.63880 * 359.97434 * 15 14 13 33 33 H 1.07999 * 122.50531 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6011 -1.1314 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9728 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2472 1.5864 -3.9289 11 1 0.1418 1.8043 -1.5160 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8893 -0.5072 3.7136 15 6 1.5015 0.0405 4.8746 16 6 1.9642 -0.6119 6.0063 17 6 2.7227 -1.6811 5.7688 18 7 3.3335 -2.5413 6.8094 19 8 3.1558 -2.2907 7.9880 20 8 4.0132 -3.4989 6.4861 21 16 2.8839 -1.9218 4.0342 22 1 -0.3633 0.6519 0.7944 23 1 -0.3632 0.3621 -0.9617 24 1 -0.3633 -1.0139 0.1673 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6975 -0.6302 -4.4268 29 1 1.6766 -1.7489 1.2494 30 1 3.1300 -0.7208 1.2496 31 1 0.9943 0.7584 2.3564 32 1 0.8783 0.9212 4.9237 33 1 1.7284 -0.2779 7.0059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591176515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:42 Heat of formation + Delta-G solvation = 25.700001 kcal Electronic energy + Delta-G solvation = -18097.342668 eV Core-core repulsion = 15060.102717 eV Total energy + Delta-G solvation = -3037.239952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.97441 -39.94203 -38.61138 -37.51598 -35.64622 -33.69940 -30.81454 -28.10092 -27.90156 -27.14941 -25.63329 -24.44682 -21.89596 -20.83724 -20.61036 -19.52778 -18.54917 -18.12980 -17.55432 -17.43246 -16.55780 -16.08550 -15.96305 -14.91253 -14.74371 -14.56113 -14.46936 -13.95425 -13.80193 -13.54855 -13.19418 -12.66859 -12.49151 -12.39932 -12.28437 -12.23610 -12.03915 -12.00916 -11.87738 -11.48105 -11.09564 -10.65246 -10.45371 -9.86760 -8.83421 -8.33155 -6.35292 -1.13820 -0.45385 0.27123 0.42921 0.75319 1.34093 1.35842 1.48598 1.51013 2.05569 2.31702 3.03741 3.83199 3.93178 4.10040 4.20115 4.33903 4.50562 4.61494 4.65361 4.73228 4.79728 4.84797 5.01210 5.04824 5.14919 5.28676 5.42599 5.54911 5.68625 5.75509 6.21171 6.36513 6.56672 6.70882 7.30535 8.83357 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044829 B = 0.004142 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.449504 B = 6758.766273 C = 7175.038280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.030 3.970 3 C -0.151 4.151 4 C -0.517 4.517 5 H 0.036 0.964 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.939 3.061 9 H -0.284 1.284 10 H -0.319 1.319 11 H -0.204 1.204 12 C 0.137 3.863 13 N -0.668 5.668 14 C 0.186 3.814 15 C -0.267 4.267 16 C 0.044 3.956 17 C -0.268 4.268 18 N 0.081 4.919 19 O -0.176 6.176 20 O -0.229 6.229 21 S 0.198 5.802 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.425 0.575 32 H 0.191 0.809 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 6.755 15.713 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 C -0.208 4.208 4 C -0.556 4.556 5 H 0.054 0.946 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.769 3.231 9 H -0.211 1.211 10 H -0.249 1.249 11 H -0.128 1.128 12 C 0.014 3.986 13 N -0.298 5.298 14 C -0.046 4.046 15 C -0.298 4.298 16 C 0.009 3.991 17 C -0.472 4.472 18 N 0.587 4.413 19 O -0.389 6.389 20 O -0.428 6.428 21 S 0.450 5.550 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.266 0.734 32 H 0.208 0.792 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.303 5.912 13.974 15.528 hybrid contribution -0.553 1.192 0.137 1.321 sum -3.856 7.104 14.111 16.262 Atomic orbital electron populations 1.22255 0.96099 1.00903 1.00933 1.18605 0.93739 0.93052 0.91692 1.22336 1.01272 0.96871 1.00325 1.20994 1.33046 1.11295 0.90232 0.94550 1.25794 0.95382 1.01172 0.95446 1.70100 1.50456 1.38197 0.99465 0.86436 0.79357 0.80401 0.76932 1.21142 1.24918 1.12783 1.21598 0.98523 0.95745 0.82777 1.44789 1.53180 1.31653 1.00183 1.22878 0.95437 0.95854 0.90478 1.19867 1.14022 1.08686 0.87227 1.20284 0.87581 0.88115 1.03125 1.25204 1.22388 1.07197 0.92419 1.42677 0.97984 0.99574 1.01089 1.94467 1.65903 1.76972 1.01572 1.94549 1.39345 1.21144 1.87756 1.85150 1.51106 1.25234 0.93480 0.91607 0.93863 0.93599 0.93069 0.94904 0.90750 0.92704 0.91983 0.91807 0.73352 0.79232 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 7.53 71.98 0.54 -4.12 16 2 C 0.03 1.07 0.50 -52.93 -0.03 1.05 16 3 C -0.15 -4.80 7.52 71.98 0.54 -4.26 16 4 C -0.52 -25.46 8.62 25.60 0.22 -25.24 16 5 H 0.04 2.03 7.99 -2.91 -0.02 2.01 16 6 C 0.02 1.06 5.32 84.65 0.45 1.51 16 7 N -0.94 -55.33 13.96 21.45 0.30 -55.03 16 8 Si 0.94 39.73 22.79 68.60 1.56 41.29 16 9 H -0.28 -11.89 7.10 99.48 0.71 -11.18 16 10 H -0.32 -14.30 7.11 99.48 0.71 -13.59 16 11 H -0.20 -7.13 4.65 99.48 0.46 -6.67 16 12 C 0.14 4.04 4.45 86.38 0.38 4.42 16 13 N -0.67 -14.10 5.20 -342.56 -1.78 -15.89 16 14 C 0.19 3.78 7.24 82.51 0.60 4.37 16 15 C -0.27 -4.23 10.21 21.41 0.22 -4.01 16 16 C 0.04 0.81 9.80 21.22 0.21 1.02 16 17 C -0.27 -6.80 7.50 80.76 0.61 -6.19 16 18 N 0.08 2.51 4.46 -48.11 -0.21 2.29 16 19 O -0.18 -5.31 18.93 18.89 0.36 -4.96 16 20 O -0.23 -7.84 19.08 18.89 0.36 -7.48 16 21 S 0.20 4.90 22.36 -56.49 -1.26 3.64 16 22 H 0.07 1.56 7.13 -2.39 -0.02 1.55 16 23 H 0.04 1.55 4.30 -2.39 -0.01 1.54 16 24 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.03 1.14 2.25 -2.38 -0.01 1.13 16 27 H 0.07 1.71 6.86 -2.38 -0.02 1.69 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.42 7.13 6.37 -92.71 -0.59 6.54 16 32 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.19 2.47 8.00 -2.91 -0.02 2.45 16 Total: -1.00 -62.80 286.16 3.38 -59.41 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.32 Total: 8.15 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 3.74 Total: -31.44 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.70 Total: -68.62 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.72 Total: -12.43 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.56 Total: 41.29 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.26 Total: 3.64 kcal Total: -62.80 3.38 -59.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591176515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.115 kcal (2) G-P(sol) polarization free energy of solvation -62.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds