Wall clock time and date at job start Mon Mar 30 2020 01:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 C 1.76203 * 107.21595 * 89.99875 * 14 12 2 18 18 C 1.38642 * 120.79236 * 269.71939 * 17 14 12 19 19 C 1.38207 * 119.16446 * 179.79738 * 18 17 14 20 20 N 1.31867 * 120.76174 * 0.48745 * 19 18 17 21 21 C 1.31871 * 121.72560 * 359.74730 * 20 19 18 22 22 C 1.38198 * 120.76326 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 28 28 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 29 29 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 30 30 H 1.08005 * 120.41913 * 0.02562 * 18 17 14 31 31 H 1.07997 * 119.61594 * 180.20710 * 19 18 17 32 32 H 1.08002 * 119.61450 * 180.02562 * 21 20 19 33 33 H 1.08002 * 120.41618 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 6 4.6444 -0.1180 -1.7880 18 6 5.2574 0.7740 -0.9216 19 6 6.5707 0.5570 -0.5496 20 7 7.2417 -0.4779 -1.0163 21 6 6.6924 -1.3437 -1.8455 22 6 5.3819 -1.1940 -2.2579 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 0.7376 -2.1442 -1.9996 28 1 2.4629 -2.5817 -1.9866 29 1 1.5295 -2.5968 -0.4711 30 1 4.7144 1.6257 -0.5392 31 1 7.0543 1.2454 0.1276 32 1 7.2734 -2.1795 -2.2064 33 1 4.9375 -1.9067 -2.9369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594759426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:24 Heat of formation + Delta-G solvation = -32.001166 kcal Electronic energy + Delta-G solvation = -19306.510230 eV Core-core repulsion = 16266.768168 eV Total energy + Delta-G solvation = -3039.742062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93146 -36.86873 -36.27677 -35.42782 -32.70376 -32.61214 -31.21591 -29.18334 -25.64856 -25.26323 -23.98342 -23.48882 -20.85257 -18.92362 -17.62323 -16.94133 -16.60210 -16.31754 -15.63027 -15.25076 -14.82069 -14.57431 -13.90540 -13.69013 -13.55063 -13.26081 -12.80431 -12.09772 -11.96382 -11.77924 -11.65786 -11.48150 -11.30172 -11.22896 -11.05016 -10.91704 -10.52339 -10.33880 -10.27125 -10.09238 -9.56414 -9.30638 -9.13298 -8.56349 -8.08191 -6.17713 -4.26778 0.67842 0.97228 1.15069 3.19454 3.27505 3.29052 3.43259 3.76121 4.17421 4.28986 4.43276 4.50433 4.97051 5.12273 5.13064 5.23592 5.49911 5.50910 5.70242 5.78231 5.97790 6.07835 6.22095 6.56904 6.66825 6.78089 6.80824 7.01707 7.33103 7.52572 7.68610 7.86901 7.95380 8.15801 8.76177 9.40294 10.87140 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.008872 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.962617 B = 3155.283205 C = 4057.617746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.265 3.735 3 H 0.061 0.939 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.976 5.976 13 C 0.103 3.897 14 S 2.684 3.316 15 O -0.970 6.970 16 O -0.953 6.953 17 C -0.623 4.623 18 C -0.058 4.058 19 C 0.081 3.919 20 N -0.455 5.455 21 C 0.075 3.925 22 C -0.078 4.078 23 H 0.094 0.906 24 H 0.014 0.986 25 H 0.034 0.966 26 H 0.265 0.735 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -3.449 -6.509 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.210 1.210 12 N -0.817 5.817 13 C -0.043 4.043 14 S 2.772 3.228 15 O -0.960 6.960 16 O -0.943 6.943 17 C -0.714 4.714 18 C -0.079 4.079 19 C -0.076 4.076 20 N -0.163 5.163 21 C -0.083 4.083 22 C -0.099 4.099 23 H 0.113 0.887 24 H 0.033 0.967 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.178 0.822 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.624 -2.979 -6.821 9.964 hybrid contribution 0.043 -0.695 1.214 1.399 sum 6.667 -3.674 -5.608 9.455 Atomic orbital electron populations 1.22054 0.97489 0.99868 1.00963 1.18839 0.92161 0.92826 0.79914 0.92085 1.21364 1.32180 1.13280 0.90162 0.91950 1.24901 0.94854 0.94915 0.98956 1.69872 1.35992 1.22423 1.23961 0.86550 0.79238 0.79446 0.82507 1.20535 1.19974 1.21049 1.57435 1.62417 1.21797 1.40055 1.21280 0.99277 0.81521 1.02225 1.02302 0.73163 0.73915 0.73434 1.93526 1.85794 1.75685 1.41042 1.93571 1.83330 1.31168 1.86234 1.32026 1.27132 1.03259 1.09001 1.21993 0.96072 0.97714 0.92108 1.22892 0.91879 0.94993 0.97877 1.67655 1.38479 1.02398 1.07800 1.22814 0.93020 0.97834 0.94594 1.21872 0.95521 0.95558 0.96945 0.88731 0.96663 0.94717 0.92509 0.93280 0.92977 0.89892 0.82768 0.81900 0.82191 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.97 37.16 0.33 -2.95 16 2 C 0.27 6.18 2.62 -69.09 -0.18 6.00 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.53 -13.16 7.99 -34.44 -0.28 -13.44 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -23.49 11.32 55.43 0.63 -22.86 16 8 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.98 -19.33 3.06 -115.85 -0.35 -19.68 16 13 C 0.10 1.73 9.28 59.85 0.56 2.29 16 14 S 2.68 50.56 5.67 -107.50 -0.61 49.95 16 15 O -0.97 -18.56 16.46 -57.17 -0.94 -19.50 16 16 O -0.95 -20.40 15.94 -57.17 -0.91 -21.31 16 17 C -0.62 -10.57 6.01 -39.28 -0.24 -10.81 16 18 C -0.06 -0.96 9.61 -39.44 -0.38 -1.34 16 19 C 0.08 1.22 11.18 -17.55 -0.20 1.02 16 20 N -0.45 -6.95 10.36 -13.25 -0.14 -7.09 16 21 C 0.07 1.03 11.18 -17.55 -0.20 0.83 16 22 C -0.08 -1.14 9.61 -39.44 -0.38 -1.52 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.03 0.73 7.67 -51.93 -0.40 0.34 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.74 7.79 -51.92 -0.40 0.33 16 29 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 30 H 0.15 2.47 7.71 -52.48 -0.40 2.07 16 31 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.15 1.81 7.72 -52.49 -0.41 1.41 16 LS Contribution 294.37 15.07 4.44 4.44 Total: -1.00 -30.24 294.37 -7.82 -38.06 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.86 Total: 1.28 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.05 Total: -18.30 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.14 Total: -49.63 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.85 Total: -40.81 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 50.56 SS G_CDS: -0.61 Total: 49.95 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.24 -7.82 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594759426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.058 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds