Wall clock time and date at job start Mon Mar 30 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 C 1.76203 * 107.21595 * 89.99875 * 14 12 2 18 18 C 1.38642 * 120.79236 * 269.71939 * 17 14 12 19 19 C 1.38207 * 119.16446 * 179.79738 * 18 17 14 20 20 N 1.31867 * 120.76174 * 0.48745 * 19 18 17 21 21 C 1.31871 * 121.72560 * 359.74730 * 20 19 18 22 22 C 1.38198 * 120.76326 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 28 28 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 29 29 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 30 30 H 1.08005 * 120.41913 * 0.02562 * 18 17 14 31 31 H 1.07997 * 119.61594 * 180.20710 * 19 18 17 32 32 H 1.08002 * 119.61450 * 180.02562 * 21 20 19 33 33 H 1.08002 * 120.41618 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 6 4.6444 -0.1180 -1.7880 18 6 5.2574 0.7740 -0.9216 19 6 6.5707 0.5570 -0.5496 20 7 7.2417 -0.4779 -1.0163 21 6 6.6924 -1.3437 -1.8455 22 6 5.3819 -1.1940 -2.2579 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 0.7376 -2.1442 -1.9996 28 1 2.4629 -2.5817 -1.9866 29 1 1.5295 -2.5968 -0.4711 30 1 4.7144 1.6257 -0.5392 31 1 7.0543 1.2454 0.1276 32 1 7.2734 -2.1795 -2.2064 33 1 4.9375 -1.9067 -2.9369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594759426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:23 Heat of formation + Delta-G solvation = -52.856776 kcal Electronic energy + Delta-G solvation = -19307.414597 eV Core-core repulsion = 16266.768168 eV Total energy + Delta-G solvation = -3040.646429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08535 -38.43072 -37.93896 -36.99199 -34.54240 -33.82287 -32.35497 -30.94881 -27.27119 -27.04641 -25.21360 -24.63796 -22.61844 -20.30135 -19.06272 -18.51363 -18.34652 -17.67666 -16.92262 -16.80014 -16.23495 -16.06280 -15.25240 -15.10200 -14.83370 -14.72688 -14.45309 -13.75828 -13.47660 -13.26976 -13.19924 -13.01528 -12.90390 -12.75169 -12.68560 -12.64112 -12.24269 -12.14223 -11.93847 -11.49497 -11.17992 -10.67474 -10.50989 -10.26824 -9.69406 -8.11144 -6.25627 -0.71107 -0.35843 0.01116 1.42875 1.45745 1.53342 1.97588 2.43188 2.52959 2.75795 3.16565 3.17763 3.40795 3.79103 3.94817 4.01756 4.08529 4.40464 4.54027 4.68428 4.72215 4.79723 4.81914 4.98693 5.01412 5.14704 5.25354 5.54796 5.59968 5.66978 5.82607 6.07706 6.26652 6.73554 6.82922 7.44067 8.93207 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.008872 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.962617 B = 3155.283205 C = 4057.617746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.270 3.730 3 H 0.032 0.968 4 C -0.532 4.532 5 H 0.065 0.935 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.287 1.287 12 N -0.984 5.984 13 C 0.093 3.907 14 S 2.697 3.303 15 O -0.973 6.973 16 O -0.987 6.987 17 C -0.635 4.635 18 C -0.081 4.081 19 C 0.080 3.920 20 N -0.466 5.466 21 C 0.081 3.919 22 C -0.080 4.080 23 H 0.071 0.929 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.264 0.736 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.190 0.810 32 H 0.203 0.797 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -5.347 -6.858 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.050 0.950 4 C -0.571 4.571 5 H 0.083 0.917 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.197 1.197 11 H -0.213 1.213 12 N -0.824 5.824 13 C -0.052 4.052 14 S 2.788 3.212 15 O -0.964 6.964 16 O -0.978 6.978 17 C -0.730 4.730 18 C -0.103 4.103 19 C -0.077 4.077 20 N -0.175 5.175 21 C -0.076 4.076 22 C -0.101 4.101 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.164 0.836 31 H 0.206 0.794 32 H 0.219 0.781 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.049 -4.886 -7.189 11.846 hybrid contribution -0.337 -0.138 1.242 1.294 sum 7.712 -5.024 -5.947 10.958 Atomic orbital electron populations 1.21944 0.97400 1.00293 1.00222 1.18506 0.92259 0.91671 0.80973 0.95003 1.21589 1.31688 1.13107 0.90750 0.91687 1.25593 0.95177 0.95546 1.01532 1.69995 1.37164 1.23687 1.24378 0.85643 0.78754 0.78349 0.79369 1.20054 1.19660 1.21255 1.57310 1.63297 1.22932 1.38843 1.21527 1.01069 0.79947 1.02633 1.01644 0.73594 0.72914 0.73040 1.93510 1.86309 1.75499 1.41055 1.93524 1.84329 1.33317 1.86624 1.31686 1.25936 1.04969 1.10409 1.22084 0.97132 0.97989 0.93057 1.23283 0.91204 0.95384 0.97847 1.67768 1.38657 1.02710 1.08330 1.23522 0.92844 0.98133 0.93149 1.22258 0.95940 0.94997 0.96872 0.91048 0.95828 0.93600 0.92621 0.92121 0.90091 0.90371 0.83619 0.79357 0.78054 0.80967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 8.97 71.98 0.65 -5.74 16 2 C 0.27 12.72 2.62 44.24 0.12 12.84 16 3 H 0.03 1.69 6.91 -2.39 -0.02 1.67 16 4 C -0.53 -26.32 7.99 25.60 0.20 -26.12 16 5 H 0.06 3.12 7.33 -2.91 -0.02 3.10 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -49.25 11.32 21.45 0.24 -49.01 16 8 Si 0.95 40.80 29.54 68.60 2.03 42.82 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 12 N -0.98 -38.40 3.06 -520.45 -1.59 -39.99 16 13 C 0.09 2.96 9.28 127.77 1.19 4.15 16 14 S 2.70 100.59 5.67 -56.49 -0.32 100.27 16 15 O -0.97 -35.82 16.46 -128.00 -2.11 -37.93 16 16 O -0.99 -43.39 15.94 -128.00 -2.04 -45.43 16 17 C -0.64 -20.87 6.01 22.46 0.14 -20.74 16 18 C -0.08 -2.66 9.61 22.36 0.21 -2.45 16 19 C 0.08 2.26 11.18 84.68 0.95 3.21 16 20 N -0.47 -12.97 10.36 -195.85 -2.03 -15.00 16 21 C 0.08 1.94 11.18 84.68 0.95 2.89 16 22 C -0.08 -2.11 9.61 22.36 0.21 -1.90 16 23 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 24 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.04 1.94 7.67 -2.39 -0.02 1.92 16 26 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 2.07 7.79 -2.38 -0.02 2.05 16 29 H 0.08 2.55 7.02 -2.39 -0.02 2.54 16 30 H 0.15 4.88 7.71 -2.91 -0.02 4.85 16 31 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.17 3.59 7.72 -2.91 -0.02 3.57 16 Total: -1.00 -64.04 294.37 0.35 -63.69 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.11 Total: 12.89 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 5.06 Total: -32.31 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -3.38 Total: -104.01 kcal Atomic # 8 Polarization: -79.21 SS G_CDS: -4.15 Total: -83.36 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 100.59 SS G_CDS: -0.32 Total: 100.27 kcal Total: -64.04 0.35 -63.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594759426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.830 kcal (2) G-P(sol) polarization free energy of solvation -64.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds