Wall clock time and date at job start Mon Mar 30 2020 01:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47118 * 2 1 4 4 C 1.46496 * 119.99953 * 275.00080 * 3 2 1 5 5 C 1.50698 * 109.47259 * 274.99703 * 4 3 2 6 6 H 1.08005 * 119.99935 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00312 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99562 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00346 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47211 * 119.99928 * 9 7 5 12 12 H 1.48495 * 109.47149 * 240.00082 * 9 7 5 13 13 S 1.65607 * 119.99955 * 94.99945 * 3 2 1 14 14 O 1.42102 * 106.40086 * 336.46374 * 13 3 2 15 15 O 1.42090 * 106.39977 * 203.54251 * 13 3 2 16 16 C 1.76203 * 107.21636 * 89.99828 * 13 3 2 17 17 C 1.38654 * 120.78365 * 89.99984 * 16 13 3 18 18 C 1.38209 * 119.15786 * 180.02562 * 17 16 13 19 19 N 1.31870 * 120.76375 * 0.26353 * 18 17 16 20 20 C 1.31872 * 121.72489 * 359.46946 * 19 18 17 21 21 C 1.38200 * 120.76402 * 0.52682 * 20 19 18 22 22 H 1.09004 * 109.47252 * 299.99611 * 1 2 3 23 23 H 1.08994 * 109.47358 * 59.99923 * 1 2 3 24 24 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47753 * 239.99996 * 2 1 3 26 26 H 1.09007 * 109.47477 * 119.99768 * 2 1 3 27 27 H 1.09001 * 109.47179 * 35.00055 * 4 3 2 28 28 H 1.08998 * 109.46955 * 154.99735 * 4 3 2 29 29 H 0.97008 * 119.99642 * 179.97438 * 8 7 5 30 30 H 1.07995 * 120.42251 * 0.04485 * 17 16 13 31 31 H 1.08002 * 119.61346 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.61160 * 180.27376 * 20 19 18 33 33 H 1.08004 * 120.41549 * 179.76941 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3839 7 6 3.8529 2.3615 -3.0843 8 7 3.0279 3.1863 -3.6914 9 14 5.5093 1.9645 -3.8512 10 1 6.2453 1.0166 -2.9765 11 1 5.3017 1.3479 -5.1861 12 1 6.2979 3.2139 -4.0004 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4415 2.4449 15 8 2.3056 3.5186 1.1999 16 6 4.1169 1.7941 1.7320 17 6 5.0985 2.6526 1.2609 18 6 6.4255 2.3640 1.5177 19 7 6.7618 1.2849 2.1971 20 6 5.8551 0.4492 2.6646 21 6 4.5088 0.6726 2.4469 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3617 1.8098 -1.9453 28 1 2.0921 3.1803 -1.0755 29 1 3.2801 3.5895 -4.5369 30 1 4.8295 3.5358 0.7005 31 1 7.1961 3.0274 1.1538 32 1 6.1686 -0.4221 3.2205 33 1 3.7712 -0.0175 2.8291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594760889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:19 Heat of formation + Delta-G solvation = -38.197228 kcal Electronic energy + Delta-G solvation = -19288.520987 eV Core-core repulsion = 16248.510244 eV Total energy + Delta-G solvation = -3040.010743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.86764 -36.83739 -36.16068 -35.38406 -32.80683 -32.54480 -31.14945 -30.03765 -26.72326 -23.95820 -23.45599 -23.16834 -21.78264 -18.89387 -17.57010 -16.99696 -16.43384 -16.39090 -15.56539 -15.42106 -14.74109 -14.53219 -13.94874 -13.86035 -13.57558 -13.36239 -12.98839 -12.16988 -12.08199 -11.81882 -11.72773 -11.59622 -11.44523 -11.17892 -11.12462 -11.01004 -10.60422 -10.47919 -10.27224 -10.01199 -9.86943 -9.42882 -9.06216 -8.57646 -8.17064 -6.19175 -4.26345 0.73712 1.03258 1.22099 3.18831 3.28108 3.30462 3.45091 3.81207 4.20220 4.30281 4.48904 4.56137 5.01498 5.15025 5.19670 5.28795 5.32610 5.56189 5.69259 5.74428 5.76653 5.86068 6.01761 6.07059 6.24431 6.57034 6.61706 6.73706 7.23698 7.32050 7.51967 7.77183 7.92870 8.05221 8.78737 9.40711 10.88618 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.010300 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.225409 B = 2717.759524 C = 3901.494550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.977 5.977 4 C 0.242 3.758 5 C -0.544 4.544 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.281 1.281 13 S 2.688 3.312 14 O -0.971 6.971 15 O -0.951 6.951 16 C -0.621 4.621 17 C -0.050 4.050 18 C 0.079 3.921 19 N -0.455 5.455 20 C 0.072 3.928 21 C -0.079 4.079 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.265 0.735 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -5.149 8.858 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.817 5.817 4 C 0.121 3.879 5 C -0.583 4.583 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.207 1.207 13 S 2.775 3.225 14 O -0.962 6.962 15 O -0.942 6.942 16 C -0.713 4.713 17 C -0.070 4.070 18 C -0.079 4.079 19 N -0.163 5.163 20 C -0.085 4.085 21 C -0.100 4.100 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.174 0.826 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.400 -4.728 9.361 10.581 hybrid contribution 0.855 -0.375 -1.007 1.373 sum 2.254 -5.103 8.354 10.046 Atomic orbital electron populations 1.22206 0.96507 1.01617 1.02592 1.21072 0.93953 0.82454 1.02441 1.57413 1.77534 1.23354 1.23425 1.19305 0.97565 0.92423 0.78646 1.21561 1.02221 1.28213 1.06311 0.92117 1.24917 0.97179 0.94731 0.96789 1.69935 1.35820 1.29626 1.17065 0.86568 0.83945 0.78396 0.79352 1.19743 1.20804 1.20692 1.02171 0.73455 0.73879 0.72948 1.93525 1.69411 1.75874 1.57352 1.93565 1.85687 1.29687 1.85222 1.31962 1.27768 1.03498 1.08071 1.22010 0.93357 0.98373 0.93305 1.22891 0.95319 0.94321 0.95366 1.67644 1.38857 1.02847 1.06984 1.22785 0.89215 0.98381 0.98149 1.21855 0.98449 0.95191 0.94528 0.92459 0.91915 0.92131 0.89906 0.91708 0.93755 0.92784 0.92525 0.82575 0.81992 0.82296 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.15 0.38 -2.12 16 2 C 0.13 2.08 6.06 -4.04 -0.02 2.05 16 3 N -0.98 -19.14 2.77 -115.66 -0.32 -19.46 16 4 C 0.24 5.71 5.43 -5.20 -0.03 5.68 16 5 C -0.54 -13.74 9.38 -34.44 -0.32 -14.07 16 6 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 9 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 S 2.69 51.21 5.67 -107.50 -0.61 50.60 16 14 O -0.97 -18.41 16.36 -57.17 -0.94 -19.34 16 15 O -0.95 -20.80 15.94 -57.17 -0.91 -21.71 16 16 C -0.62 -10.86 6.01 -39.28 -0.24 -11.09 16 17 C -0.05 -0.86 9.61 -39.44 -0.38 -1.24 16 18 C 0.08 1.24 11.18 -17.55 -0.20 1.05 16 19 N -0.45 -7.22 10.36 -13.25 -0.14 -7.36 16 20 C 0.07 1.02 11.18 -17.55 -0.20 0.83 16 21 C -0.08 -1.19 9.61 -39.45 -0.38 -1.57 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 26 H 0.06 0.92 7.61 -51.93 -0.40 0.52 16 27 H 0.04 1.08 8.11 -51.93 -0.42 0.66 16 28 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.16 2.71 7.72 -52.49 -0.41 2.30 16 31 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.15 1.83 7.72 -52.48 -0.41 1.42 16 LS Contribution 302.25 15.07 4.55 4.55 Total: -1.00 -30.89 302.25 -8.19 -39.08 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.07 Total: 0.88 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.48 Total: -18.81 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.28 Total: -50.58 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.85 Total: -41.06 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 51.21 SS G_CDS: -0.61 Total: 50.60 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.89 -8.19 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594760889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.880 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds