Wall clock time and date at job start Mon Mar 30 2020 01:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47118 * 2 1 4 4 C 1.46496 * 119.99953 * 275.00080 * 3 2 1 5 5 C 1.50698 * 109.47259 * 274.99703 * 4 3 2 6 6 H 1.08005 * 119.99935 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00312 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99562 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00346 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47211 * 119.99928 * 9 7 5 12 12 H 1.48495 * 109.47149 * 240.00082 * 9 7 5 13 13 S 1.65607 * 119.99955 * 94.99945 * 3 2 1 14 14 O 1.42102 * 106.40086 * 336.46374 * 13 3 2 15 15 O 1.42090 * 106.39977 * 203.54251 * 13 3 2 16 16 C 1.76203 * 107.21636 * 89.99828 * 13 3 2 17 17 C 1.38654 * 120.78365 * 89.99984 * 16 13 3 18 18 C 1.38209 * 119.15786 * 180.02562 * 17 16 13 19 19 N 1.31870 * 120.76375 * 0.26353 * 18 17 16 20 20 C 1.31872 * 121.72489 * 359.46946 * 19 18 17 21 21 C 1.38200 * 120.76402 * 0.52682 * 20 19 18 22 22 H 1.09004 * 109.47252 * 299.99611 * 1 2 3 23 23 H 1.08994 * 109.47358 * 59.99923 * 1 2 3 24 24 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47753 * 239.99996 * 2 1 3 26 26 H 1.09007 * 109.47477 * 119.99768 * 2 1 3 27 27 H 1.09001 * 109.47179 * 35.00055 * 4 3 2 28 28 H 1.08998 * 109.46955 * 154.99735 * 4 3 2 29 29 H 0.97008 * 119.99642 * 179.97438 * 8 7 5 30 30 H 1.07995 * 120.42251 * 0.04485 * 17 16 13 31 31 H 1.08002 * 119.61346 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.61160 * 180.27376 * 20 19 18 33 33 H 1.08004 * 120.41549 * 179.76941 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3839 7 6 3.8529 2.3615 -3.0843 8 7 3.0279 3.1863 -3.6914 9 14 5.5093 1.9645 -3.8512 10 1 6.2453 1.0166 -2.9765 11 1 5.3017 1.3479 -5.1861 12 1 6.2979 3.2139 -4.0004 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4415 2.4449 15 8 2.3056 3.5186 1.1999 16 6 4.1169 1.7941 1.7320 17 6 5.0985 2.6526 1.2609 18 6 6.4255 2.3640 1.5177 19 7 6.7618 1.2849 2.1971 20 6 5.8551 0.4492 2.6646 21 6 4.5088 0.6726 2.4469 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3617 1.8098 -1.9453 28 1 2.0921 3.1803 -1.0755 29 1 3.2801 3.5895 -4.5369 30 1 4.8295 3.5358 0.7005 31 1 7.1961 3.0274 1.1538 32 1 6.1686 -0.4221 3.2205 33 1 3.7712 -0.0175 2.8291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594760889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:19 Heat of formation + Delta-G solvation = -59.442559 kcal Electronic energy + Delta-G solvation = -19289.442254 eV Core-core repulsion = 16248.510244 eV Total energy + Delta-G solvation = -3040.932010 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06710 -38.40690 -37.73257 -36.97206 -34.71925 -33.80266 -32.33610 -31.54221 -28.53076 -25.27671 -24.90298 -24.59902 -23.28244 -20.29695 -19.01615 -18.69034 -18.24009 -17.73931 -16.97258 -16.78124 -16.29560 -16.03609 -15.45981 -15.10008 -14.77596 -14.72231 -14.64027 -13.83151 -13.64759 -13.38075 -13.23118 -13.09432 -12.88434 -12.79068 -12.69338 -12.61390 -12.27589 -12.16315 -11.76317 -11.64020 -11.40257 -10.67758 -10.59797 -10.24594 -9.80743 -8.19377 -6.32595 -0.68711 -0.33392 0.03277 1.38533 1.41893 1.51403 1.96717 2.39596 2.53878 2.76371 3.12615 3.18977 3.41934 3.80828 3.95708 3.98160 4.03940 4.41550 4.44708 4.49575 4.56026 4.72123 4.73274 4.82998 5.01446 5.16069 5.26585 5.43181 5.50398 5.56765 5.73526 5.89731 6.07412 6.74907 6.79170 7.37761 8.88707 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.010300 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.225409 B = 2717.759524 C = 3901.494550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.983 5.983 4 C 0.258 3.742 5 C -0.542 4.542 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.279 1.279 13 S 2.698 3.302 14 O -0.970 6.970 15 O -0.989 6.989 16 C -0.634 4.634 17 C -0.075 4.075 18 C 0.076 3.924 19 N -0.465 5.465 20 C 0.080 3.920 21 C -0.079 4.079 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.266 0.734 30 H 0.143 0.857 31 H 0.187 0.813 32 H 0.203 0.797 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -7.308 9.915 12.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 N -0.822 5.822 4 C 0.134 3.866 5 C -0.581 4.581 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.205 1.205 13 S 2.789 3.211 14 O -0.961 6.961 15 O -0.980 6.980 16 C -0.729 4.729 17 C -0.096 4.096 18 C -0.081 4.081 19 N -0.174 5.174 20 C -0.078 4.078 21 C -0.100 4.100 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.204 0.796 32 H 0.220 0.780 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.741 -6.895 10.423 12.794 hybrid contribution 0.426 0.232 -1.229 1.321 sum 3.167 -6.663 9.195 11.788 Atomic orbital electron populations 1.22203 0.95403 1.03504 1.01629 1.21396 0.95029 0.80779 1.03737 1.57309 1.78349 1.24536 1.21999 1.18830 0.96577 0.91216 0.79962 1.21791 1.02639 1.27554 1.06119 0.91800 1.25682 1.00352 0.94713 0.97480 1.70047 1.37680 1.30927 1.17612 0.85608 0.80046 0.78199 0.78475 1.19128 1.20504 1.20450 1.01595 0.74032 0.72909 0.72561 1.93513 1.70088 1.75559 1.56914 1.93515 1.86647 1.32148 1.85644 1.31649 1.26164 1.05180 1.09870 1.22045 0.94444 0.98562 0.94566 1.23244 0.95066 0.94763 0.94991 1.67759 1.39409 1.03051 1.07175 1.23522 0.88535 0.98834 0.96909 1.22259 0.99786 0.94439 0.93491 0.93003 0.93300 0.88818 0.90006 0.88940 0.95260 0.95726 0.92455 0.83910 0.79639 0.77998 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 10.24 71.98 0.74 -4.01 16 2 C 0.12 3.61 6.06 86.38 0.52 4.14 16 3 N -0.98 -38.54 2.77 -519.85 -1.44 -39.98 16 4 C 0.26 12.49 5.43 85.63 0.47 12.96 16 5 C -0.54 -27.58 9.38 25.60 0.24 -27.34 16 6 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.02 0.94 5.46 84.65 0.46 1.40 16 8 N -0.92 -52.04 13.29 21.45 0.28 -51.76 16 9 Si 0.95 41.60 29.54 68.60 2.03 43.62 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 13 S 2.70 102.69 5.67 -56.49 -0.32 102.37 16 14 O -0.97 -35.55 16.36 -128.00 -2.09 -37.64 16 15 O -0.99 -44.86 15.94 -128.00 -2.04 -46.90 16 16 C -0.63 -21.46 6.01 22.47 0.14 -21.33 16 17 C -0.08 -2.58 9.61 22.36 0.21 -2.37 16 18 C 0.08 2.28 11.18 84.68 0.95 3.23 16 19 N -0.47 -13.41 10.36 -195.84 -2.03 -15.43 16 20 C 0.08 1.95 11.18 84.68 0.95 2.90 16 21 C -0.08 -2.12 9.61 22.36 0.21 -1.91 16 22 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 26 H 0.09 2.36 7.61 -2.38 -0.02 2.35 16 27 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 28 H 0.02 1.34 6.91 -2.39 -0.02 1.32 16 29 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 30 H 0.14 5.17 7.72 -2.91 -0.02 5.15 16 31 H 0.19 4.41 8.06 -2.91 -0.02 4.38 16 32 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.17 3.63 7.72 -2.91 -0.02 3.60 16 Total: -1.00 -66.30 302.25 0.38 -65.92 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.10 Total: 12.13 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 4.89 Total: -32.33 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.18 Total: -107.17 kcal Atomic # 8 Polarization: -80.41 SS G_CDS: -4.13 Total: -84.54 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 102.69 SS G_CDS: -0.32 Total: 102.37 kcal Total: -66.30 0.38 -65.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594760889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.475 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds