Wall clock time and date at job start Mon Mar 30 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 H 1.08997 * 109.47249 * 54.67416 * 3 2 1 5 5 C 1.50699 * 109.46959 * 174.66987 * 3 2 1 6 6 H 1.08010 * 119.99843 * 119.72793 * 5 3 2 7 7 C 1.37875 * 120.00457 * 299.99998 * 5 3 2 8 8 N 1.31508 * 120.00314 * 179.72592 * 7 5 3 9 9 Si 1.86801 * 119.99764 * 359.72816 * 7 5 3 10 10 H 1.48493 * 109.47619 * 89.99517 * 9 7 5 11 11 H 1.48500 * 109.47205 * 209.99921 * 9 7 5 12 12 H 1.48507 * 109.47077 * 329.99532 * 9 7 5 13 13 N 1.46495 * 109.47277 * 294.67298 * 3 2 1 14 14 S 1.65604 * 120.00372 * 143.90542 * 13 3 2 15 15 O 1.42101 * 106.40314 * 176.82762 * 14 13 3 16 16 O 1.42103 * 106.39577 * 309.74724 * 14 13 3 17 17 C 1.76198 * 107.22028 * 63.28381 * 14 13 3 18 18 C 1.38650 * 120.79245 * 269.72836 * 17 14 13 19 19 C 1.38207 * 119.16077 * 179.79701 * 18 17 14 20 20 N 1.31862 * 120.76772 * 0.48226 * 19 18 17 21 21 C 1.31873 * 121.72426 * 359.74302 * 20 19 18 22 22 C 1.38206 * 120.76698 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47360 * 55.44206 * 1 2 3 24 24 H 1.09003 * 109.47277 * 175.44735 * 1 2 3 25 25 H 1.09009 * 109.46976 * 295.44446 * 1 2 3 26 26 H 1.09004 * 109.47140 * 240.00346 * 2 1 3 27 27 H 1.09000 * 109.47284 * 120.00221 * 2 1 3 28 28 H 0.97003 * 120.00126 * 180.02562 * 8 7 5 29 29 H 0.97003 * 120.00131 * 323.90215 * 13 3 2 30 30 H 1.07997 * 120.41722 * 359.97438 * 18 17 14 31 31 H 1.08003 * 119.61481 * 180.20401 * 19 18 17 32 32 H 1.08007 * 119.61939 * 179.97438 * 21 20 19 33 33 H 1.07998 * 120.42035 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 0.8384 5 6 3.5412 1.4445 0.1320 6 1 4.1509 1.8837 -0.6439 7 6 4.1366 0.8808 1.2404 8 7 5.4469 0.8778 1.3530 9 14 3.0821 0.1212 2.5822 10 1 2.8562 -1.3152 2.2808 11 1 3.7756 0.2496 3.8891 12 1 1.7761 0.8254 2.6437 13 7 1.6592 2.0951 -1.2551 14 16 1.2363 3.6962 -1.2608 15 8 0.9980 4.0435 -2.6180 16 8 0.2663 3.8586 -0.2351 17 6 2.6538 4.6120 -0.7544 18 6 2.8732 4.8976 0.5845 19 6 3.9985 5.6148 0.9445 20 7 4.8523 6.0336 0.0310 21 6 4.6733 5.7844 -1.2515 22 6 3.5736 5.0690 -1.6860 23 1 -0.3634 0.5829 -0.8463 24 1 -0.3634 -1.0244 -0.0816 25 1 -0.3633 0.4416 0.9281 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.8658 0.4808 2.1327 29 1 1.6548 1.5894 -2.0828 30 1 2.1751 4.5615 1.3368 31 1 4.1784 5.8385 1.9856 32 1 5.3942 6.1442 -1.9709 33 1 3.4323 4.8684 -2.7377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594768083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:25 Heat of formation + Delta-G solvation = -36.651248 kcal Electronic energy + Delta-G solvation = -19411.864695 eV Core-core repulsion = 16371.920990 eV Total energy + Delta-G solvation = -3039.943705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70293 -36.96599 -36.32800 -35.50820 -32.44366 -32.33438 -31.15759 -30.99771 -27.32400 -23.84675 -23.30453 -22.81369 -20.74404 -19.30821 -18.00300 -17.18091 -16.75980 -16.28227 -15.56839 -15.43792 -14.74438 -14.64120 -14.06153 -13.68752 -13.56882 -13.45029 -12.83142 -12.33718 -12.17864 -11.81145 -11.74271 -11.66399 -11.55218 -11.32819 -11.12273 -10.91246 -10.67070 -10.17984 -10.01474 -9.89541 -9.55182 -9.27628 -8.88292 -8.75307 -8.47985 -6.27008 -4.30439 0.77152 1.11485 1.39752 3.12628 3.25054 3.26584 3.45387 3.88951 4.20374 4.21458 4.61559 4.66901 5.01089 5.12610 5.28938 5.40914 5.70115 5.71524 5.76059 5.90939 5.92339 5.97207 6.12743 6.14314 6.40222 6.49052 6.58557 6.81721 6.89064 7.10976 7.38827 7.67684 8.11409 8.28534 8.76161 9.32250 10.85014 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.010483 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.386941 B = 2670.330295 C = 3751.565489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.245 3.755 4 H 0.049 0.951 5 C -0.540 4.540 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.259 1.259 13 N -1.091 6.091 14 S 2.698 3.302 15 O -0.975 6.975 16 O -0.962 6.962 17 C -0.611 4.611 18 C -0.050 4.050 19 C 0.087 3.913 20 N -0.451 5.451 21 C 0.078 3.922 22 C -0.072 4.072 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.267 0.733 29 H 0.411 0.589 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 4.499 -3.132 7.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.140 3.860 4 H 0.066 0.934 5 C -0.579 4.579 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.523 5.523 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.852 5.852 14 S 2.786 3.214 15 O -0.966 6.966 16 O -0.952 6.952 17 C -0.704 4.704 18 C -0.071 4.071 19 C -0.071 4.071 20 N -0.159 5.159 21 C -0.080 4.080 22 C -0.093 4.093 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.246 0.754 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.603 5.393 -2.788 8.262 hybrid contribution -0.148 -1.305 0.453 1.390 sum -5.752 4.088 -2.335 7.433 Atomic orbital electron populations 1.21874 0.97296 1.00407 1.01754 1.22141 0.94013 0.99018 1.02006 1.19052 0.95904 0.90279 0.80809 0.93378 1.21357 0.89165 1.40143 1.07244 0.90094 1.24890 0.94754 0.95160 0.97650 1.69875 1.08838 1.44120 1.29464 0.87087 0.81098 0.80281 0.81419 1.20080 1.22018 1.18389 1.55197 1.86003 1.26544 1.17430 1.01643 0.73764 0.72969 0.73032 1.93542 1.84881 1.83446 1.34686 1.93566 1.56165 1.85895 1.59577 1.31476 1.22021 1.14971 1.01955 1.21804 0.97623 0.93047 0.94656 1.22767 0.90196 0.94907 0.99208 1.67612 1.28294 1.17675 1.02357 1.22742 0.96134 0.96428 0.92670 1.21770 0.93192 0.94370 1.00016 0.92803 0.93699 0.93076 0.91429 0.92168 0.92322 0.75444 0.83452 0.82255 0.82400 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.85 37.16 0.37 -2.21 16 2 C -0.13 -2.55 5.04 -26.73 -0.13 -2.69 16 3 C 0.25 5.12 1.85 -69.09 -0.13 4.99 16 4 H 0.05 1.04 6.60 -51.93 -0.34 0.70 16 5 C -0.54 -13.35 9.42 -34.44 -0.32 -13.67 16 6 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 7 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.89 -25.11 13.96 55.43 0.77 -24.34 16 9 Si 0.87 19.91 24.42 -169.99 -4.15 15.76 16 10 H -0.27 -6.10 6.82 56.52 0.39 -5.72 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.26 -5.62 6.53 56.52 0.37 -5.25 16 13 N -1.09 -19.51 4.84 -5.89 -0.03 -19.54 16 14 S 2.70 47.91 5.73 -107.50 -0.62 47.29 16 15 O -0.98 -17.94 17.38 -57.17 -0.99 -18.93 16 16 O -0.96 -18.83 16.79 -57.17 -0.96 -19.79 16 17 C -0.61 -10.85 5.95 -39.27 -0.23 -11.08 16 18 C -0.05 -0.89 9.61 -39.44 -0.38 -1.26 16 19 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 20 N -0.45 -7.89 10.36 -13.25 -0.14 -8.03 16 21 C 0.08 1.24 11.18 -17.55 -0.20 1.04 16 22 C -0.07 -1.18 9.61 -39.44 -0.38 -1.56 16 23 H 0.05 0.83 7.64 -51.93 -0.40 0.43 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.24 3.23 -51.93 -0.17 1.08 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.41 6.34 8.85 -34.47 -0.31 6.03 16 30 H 0.15 2.41 7.71 -52.49 -0.40 2.00 16 31 H 0.16 2.21 8.06 -52.48 -0.42 1.78 16 32 H 0.16 1.93 8.06 -52.48 -0.42 1.50 16 33 H 0.15 2.01 7.72 -52.49 -0.41 1.60 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -31.36 291.76 -7.16 -38.52 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.74 Total: 7.81 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -1.70 Total: -23.17 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.61 Total: -51.90 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -1.95 Total: -38.72 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.15 Total: 15.76 kcal Atomic # 16 Polarization: 47.91 SS G_CDS: -0.62 Total: 47.29 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.36 -7.16 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594768083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.871 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds