Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 H 1.08997 * 109.47249 * 54.67416 * 3 2 1 5 5 C 1.50699 * 109.46959 * 174.66987 * 3 2 1 6 6 H 1.08010 * 119.99843 * 119.72793 * 5 3 2 7 7 C 1.37875 * 120.00457 * 299.99998 * 5 3 2 8 8 N 1.31508 * 120.00314 * 179.72592 * 7 5 3 9 9 Si 1.86801 * 119.99764 * 359.72816 * 7 5 3 10 10 H 1.48493 * 109.47619 * 89.99517 * 9 7 5 11 11 H 1.48500 * 109.47205 * 209.99921 * 9 7 5 12 12 H 1.48507 * 109.47077 * 329.99532 * 9 7 5 13 13 N 1.46495 * 109.47277 * 294.67298 * 3 2 1 14 14 S 1.65604 * 120.00372 * 143.90542 * 13 3 2 15 15 O 1.42101 * 106.40314 * 176.82762 * 14 13 3 16 16 O 1.42103 * 106.39577 * 309.74724 * 14 13 3 17 17 C 1.76198 * 107.22028 * 63.28381 * 14 13 3 18 18 C 1.38650 * 120.79245 * 269.72836 * 17 14 13 19 19 C 1.38207 * 119.16077 * 179.79701 * 18 17 14 20 20 N 1.31862 * 120.76772 * 0.48226 * 19 18 17 21 21 C 1.31873 * 121.72426 * 359.74302 * 20 19 18 22 22 C 1.38206 * 120.76698 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47360 * 55.44206 * 1 2 3 24 24 H 1.09003 * 109.47277 * 175.44735 * 1 2 3 25 25 H 1.09009 * 109.46976 * 295.44446 * 1 2 3 26 26 H 1.09004 * 109.47140 * 240.00346 * 2 1 3 27 27 H 1.09000 * 109.47284 * 120.00221 * 2 1 3 28 28 H 0.97003 * 120.00126 * 180.02562 * 8 7 5 29 29 H 0.97003 * 120.00131 * 323.90215 * 13 3 2 30 30 H 1.07997 * 120.41722 * 359.97438 * 18 17 14 31 31 H 1.08003 * 119.61481 * 180.20401 * 19 18 17 32 32 H 1.08007 * 119.61939 * 179.97438 * 21 20 19 33 33 H 1.07998 * 120.42035 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 0.8384 5 6 3.5412 1.4445 0.1320 6 1 4.1509 1.8837 -0.6439 7 6 4.1366 0.8808 1.2404 8 7 5.4469 0.8778 1.3530 9 14 3.0821 0.1212 2.5822 10 1 2.8562 -1.3152 2.2808 11 1 3.7756 0.2496 3.8891 12 1 1.7761 0.8254 2.6437 13 7 1.6592 2.0951 -1.2551 14 16 1.2363 3.6962 -1.2608 15 8 0.9980 4.0435 -2.6180 16 8 0.2663 3.8586 -0.2351 17 6 2.6538 4.6120 -0.7544 18 6 2.8732 4.8976 0.5845 19 6 3.9985 5.6148 0.9445 20 7 4.8523 6.0336 0.0310 21 6 4.6733 5.7844 -1.2515 22 6 3.5736 5.0690 -1.6860 23 1 -0.3634 0.5829 -0.8463 24 1 -0.3634 -1.0244 -0.0816 25 1 -0.3633 0.4416 0.9281 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.8658 0.4808 2.1327 29 1 1.6548 1.5894 -2.0828 30 1 2.1751 4.5615 1.3368 31 1 4.1784 5.8385 1.9856 32 1 5.3942 6.1442 -1.9709 33 1 3.4323 4.8684 -2.7377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594768083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = -60.872277 kcal Electronic energy + Delta-G solvation = -19412.914998 eV Core-core repulsion = 16371.920990 eV Total energy + Delta-G solvation = -3040.994007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99378 -38.47436 -37.90926 -36.99626 -34.28819 -33.75366 -32.59989 -32.27804 -29.07403 -25.18097 -24.60987 -24.48451 -22.32985 -20.73341 -19.46018 -18.82425 -18.41821 -17.68169 -17.13708 -16.78369 -16.29912 -16.03060 -15.58914 -15.21297 -14.96945 -14.68724 -14.52222 -13.99938 -13.75193 -13.31651 -13.21819 -13.17740 -12.89457 -12.85072 -12.59444 -12.54401 -12.25220 -11.74200 -11.64287 -11.39710 -11.25571 -10.70108 -10.62066 -10.17104 -10.10540 -8.28074 -6.33345 -0.64168 -0.25045 0.10622 1.32489 1.40596 1.47365 2.00769 2.31722 2.53138 2.83182 3.06392 3.24770 3.47198 3.84224 4.01535 4.10873 4.23711 4.30109 4.46722 4.48832 4.61957 4.64894 4.74086 4.83905 4.93533 5.09351 5.17608 5.36511 5.53104 5.58056 5.62610 6.22202 6.36116 6.73299 6.82124 7.32641 8.87165 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.010483 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.386941 B = 2670.330295 C = 3751.565489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.247 3.753 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.048 0.952 7 C 0.029 3.971 8 N -0.937 5.937 9 Si 0.920 3.080 10 H -0.263 1.263 11 H -0.302 1.302 12 H -0.240 1.240 13 N -1.087 6.087 14 S 2.717 3.283 15 O -0.979 6.979 16 O -0.979 6.979 17 C -0.628 4.628 18 C -0.070 4.070 19 C 0.075 3.925 20 N -0.469 5.469 21 C 0.074 3.926 22 C -0.080 4.080 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.423 0.577 30 H 0.154 0.846 31 H 0.183 0.817 32 H 0.194 0.806 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 4.208 -3.561 8.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.141 3.859 4 H 0.063 0.937 5 C -0.564 4.564 6 H 0.067 0.933 7 C -0.170 4.170 8 N -0.576 5.576 9 Si 0.747 3.253 10 H -0.189 1.189 11 H -0.230 1.230 12 H -0.164 1.164 13 N -0.848 5.848 14 S 2.805 3.195 15 O -0.970 6.970 16 O -0.969 6.969 17 C -0.722 4.722 18 C -0.091 4.091 19 C -0.082 4.082 20 N -0.178 5.178 21 C -0.084 4.084 22 C -0.101 4.101 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.259 0.741 30 H 0.171 0.829 31 H 0.200 0.800 32 H 0.211 0.789 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.016 5.095 -3.245 9.258 hybrid contribution 0.327 -1.136 0.477 1.275 sum -6.689 3.959 -2.768 8.251 Atomic orbital electron populations 1.21864 0.94820 1.02346 1.02115 1.22096 0.96268 0.97184 1.01917 1.18867 0.93284 0.91881 0.81891 0.93659 1.21530 0.91075 1.38066 1.05701 0.93345 1.25574 0.95488 0.96029 0.99955 1.70015 1.10766 1.46427 1.30417 0.86285 0.80292 0.80323 0.78359 1.18866 1.22995 1.16355 1.55036 1.85755 1.26851 1.17173 1.01046 0.73370 0.72576 0.72482 1.93531 1.85066 1.83441 1.34921 1.93539 1.57141 1.86068 1.60113 1.31527 1.22465 1.15642 1.02530 1.22011 0.98322 0.93831 0.94971 1.23204 0.89918 0.94615 1.00445 1.67682 1.28663 1.18283 1.03183 1.23382 0.96552 0.95602 0.92845 1.22148 0.92951 0.93999 1.01014 0.91783 0.91151 0.93346 0.90529 0.93338 0.92605 0.74071 0.82881 0.79995 0.78928 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.85 71.98 0.71 -3.84 16 2 C -0.14 -4.88 5.04 30.59 0.15 -4.72 16 3 C 0.25 9.95 1.85 44.25 0.08 10.04 16 4 H 0.05 1.89 6.60 -2.39 -0.02 1.87 16 5 C -0.52 -25.84 9.42 25.60 0.24 -25.60 16 6 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 7 C 0.03 1.52 5.45 84.66 0.46 1.98 16 8 N -0.94 -54.09 13.96 21.45 0.30 -53.79 16 9 Si 0.92 40.35 24.42 68.60 1.68 42.03 16 10 H -0.26 -10.96 6.82 99.48 0.68 -10.28 16 11 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.24 -9.66 6.53 99.48 0.65 -9.01 16 13 N -1.09 -37.11 4.84 -172.54 -0.83 -37.95 16 14 S 2.72 92.77 5.73 -56.49 -0.32 92.45 16 15 O -0.98 -34.27 17.38 -128.00 -2.23 -36.49 16 16 O -0.98 -36.95 16.79 -128.00 -2.15 -39.10 16 17 C -0.63 -21.80 5.95 22.47 0.13 -21.67 16 18 C -0.07 -2.45 9.61 22.36 0.21 -2.24 16 19 C 0.08 2.52 11.18 84.68 0.95 3.47 16 20 N -0.47 -16.07 10.36 -195.83 -2.03 -18.10 16 21 C 0.07 2.24 11.18 84.68 0.95 3.19 16 22 C -0.08 -2.51 9.61 22.36 0.21 -2.30 16 23 H 0.06 1.75 7.64 -2.39 -0.02 1.73 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.05 1.87 3.23 -2.39 -0.01 1.87 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.42 12.22 8.85 -96.74 -0.86 11.37 16 30 H 0.15 4.98 7.71 -2.91 -0.02 4.96 16 31 H 0.18 4.95 8.06 -2.91 -0.02 4.93 16 32 H 0.19 4.26 8.06 -2.91 -0.02 4.23 16 33 H 0.17 4.33 7.72 -2.91 -0.02 4.31 16 Total: -1.00 -66.14 291.76 -1.29 -67.43 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.19 Total: 25.22 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 4.11 Total: -41.70 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -2.56 Total: -109.84 kcal Atomic # 8 Polarization: -71.22 SS G_CDS: -4.37 Total: -75.59 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.68 Total: 42.03 kcal Atomic # 16 Polarization: 92.77 SS G_CDS: -0.32 Total: 92.45 kcal Total: -66.14 -1.29 -67.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594768083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.560 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds