Wall clock time and date at job start Mon Mar 30 2020 02:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42100 * 110.54230 * 2 1 4 4 O 1.42104 * 110.53857 * 223.25487 * 2 1 3 5 5 C 1.76196 * 104.45335 * 111.62829 * 2 1 3 6 6 N 1.30497 * 125.65119 * 270.17985 * 5 2 1 7 7 C 1.34122 * 109.25932 * 180.28809 * 6 5 2 8 8 C 1.34673 * 108.01902 * 359.72259 * 7 6 5 9 9 N 1.35040 * 125.64951 * 89.99367 * 5 2 1 10 10 C 1.46499 * 126.39959 * 359.97438 * 9 5 2 11 11 C 1.52998 * 109.47392 * 92.30513 * 10 9 5 12 12 C 1.50698 * 115.55156 * 176.97472 * 11 10 9 13 13 H 1.08002 * 119.99543 * 219.67542 * 12 11 10 14 14 C 1.37876 * 120.00103 * 39.67267 * 12 11 10 15 15 N 1.31506 * 119.99943 * 5.75237 * 14 12 11 16 16 Si 1.86796 * 119.99744 * 185.75069 * 14 12 11 17 17 H 1.48500 * 109.47096 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47284 * 300.00084 * 16 14 12 19 19 H 1.48502 * 109.47010 * 60.00282 * 16 14 12 20 20 C 1.53010 * 117.51451 * 322.67423 * 11 10 9 21 21 C 1.53002 * 59.99964 * 107.47996 * 20 11 10 22 22 H 1.09004 * 109.46921 * 308.37676 * 1 2 3 23 23 H 1.08996 * 109.47292 * 68.37150 * 1 2 3 24 24 H 1.09002 * 109.47334 * 188.37135 * 1 2 3 25 25 H 1.07995 * 125.99183 * 179.72037 * 7 6 5 26 26 H 1.07993 * 126.59227 * 180.02562 * 8 7 6 27 27 H 1.09001 * 109.46895 * 332.30508 * 10 9 5 28 28 H 1.08997 * 109.46942 * 212.30672 * 10 9 5 29 29 H 0.97001 * 120.00100 * 174.99461 * 15 14 12 30 30 H 1.08995 * 117.49531 * 214.96704 * 20 11 10 31 31 H 1.08996 * 117.49688 * 359.97438 * 20 11 10 32 32 H 1.08996 * 117.49740 * 252.50903 * 21 20 11 33 33 H 1.09001 * 117.49899 * 107.49007 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 6 2.2538 -0.6289 1.5861 6 7 2.4404 0.0851 2.6624 7 6 2.7689 -0.7253 3.6794 8 6 2.7805 -1.9902 3.2171 9 7 2.4501 -1.9299 1.8901 10 6 2.3367 -3.0643 0.9702 11 6 3.7066 -3.3634 0.3579 12 6 3.7616 -4.5569 -0.5605 13 1 4.6141 -5.2194 -0.5345 14 6 2.7235 -4.8031 -1.4339 15 7 1.7399 -3.9375 -1.5469 16 14 2.7143 -6.3661 -2.4567 17 1 1.4983 -6.3930 -3.3087 18 1 3.9236 -6.4014 -3.3177 19 1 2.7132 -7.5469 -1.5561 20 6 4.6064 -2.1720 0.0227 21 6 4.9414 -3.0727 1.2133 22 1 -0.3633 0.6380 0.8057 23 1 -0.3634 0.3788 -0.9553 24 1 -0.3634 -1.0167 0.1496 25 1 2.9860 -0.4175 4.6915 26 1 3.0065 -2.8808 3.7844 27 1 1.6299 -2.8198 0.1772 28 1 1.9833 -3.9398 1.5148 29 1 1.0476 -4.0742 -2.2124 30 1 5.2380 -2.2516 -0.8620 31 1 4.2222 -1.1750 0.2381 32 1 4.7778 -2.6681 2.2121 33 1 5.7936 -3.7448 1.1118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594889523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:24 Heat of formation + Delta-G solvation = 35.693637 kcal Electronic energy + Delta-G solvation = -19889.033809 eV Core-core repulsion = 16852.227214 eV Total energy + Delta-G solvation = -3036.806595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74236 -37.08700 -36.31947 -35.38350 -32.62721 -32.16481 -29.62044 -29.10631 -26.66389 -25.30829 -21.98436 -21.47893 -20.71080 -19.54945 -18.18192 -16.89491 -16.66542 -15.87553 -15.35645 -15.19363 -14.77625 -14.63038 -13.85580 -13.41108 -13.28565 -13.03518 -12.91874 -12.51410 -12.16865 -11.68047 -11.55735 -11.34092 -11.06120 -11.02478 -10.74771 -10.62406 -10.42891 -10.26594 -9.98958 -9.83246 -9.15847 -8.99005 -8.73251 -8.40963 -8.13831 -6.13289 -4.18856 0.42300 2.11106 3.11769 3.21720 3.25439 3.27819 3.30789 3.40994 4.28176 4.31927 4.56207 4.92685 4.99367 5.05016 5.37046 5.49304 5.55386 5.76390 5.82567 5.97256 6.00938 6.32007 6.47388 6.57758 6.68683 6.88290 7.05875 7.14275 7.18522 7.37313 7.51926 7.80745 8.14818 8.27131 8.76026 9.40738 10.88422 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.008648 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.246243 B = 3237.106573 C = 3850.231318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.511 3.489 3 O -0.928 6.928 4 O -0.861 6.861 5 C -0.339 4.339 6 N -0.418 5.418 7 C -0.049 4.049 8 C -0.013 4.013 9 N -0.379 5.379 10 C 0.110 3.890 11 C 0.054 3.946 12 C -0.490 4.490 13 H 0.064 0.936 14 C 0.071 3.929 15 N -0.867 5.867 16 Si 0.899 3.101 17 H -0.286 1.286 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.171 4.171 21 C -0.226 4.226 22 H 0.126 0.874 23 H 0.132 0.868 24 H 0.132 0.868 25 H 0.171 0.829 26 H 0.176 0.824 27 H 0.156 0.844 28 H 0.079 0.921 29 H 0.265 0.735 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 3.430 5.145 7.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.681 3.319 3 O -0.924 6.924 4 O -0.857 6.857 5 C -0.677 4.677 6 N -0.138 5.138 7 C -0.204 4.204 8 C -0.155 4.155 9 N -0.056 5.056 10 C -0.009 4.009 11 C 0.053 3.947 12 C -0.527 4.527 13 H 0.082 0.918 14 C -0.133 4.133 15 N -0.503 5.503 16 Si 0.726 3.274 17 H -0.211 1.211 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.210 4.210 21 C -0.263 4.263 22 H 0.145 0.855 23 H 0.150 0.850 24 H 0.151 0.849 25 H 0.188 0.812 26 H 0.193 0.807 27 H 0.173 0.827 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.498 4.376 4.313 7.615 hybrid contribution -0.190 -1.950 0.372 1.994 sum -4.688 2.426 4.685 7.058 Atomic orbital electron populations 1.30215 1.26512 1.11956 1.11269 1.05699 0.78094 0.75142 0.72928 1.93571 1.77359 1.36400 1.85112 1.93942 1.75553 1.59305 1.56893 1.36347 1.22321 0.88149 1.20856 1.70137 1.13247 1.33014 0.97405 1.22463 1.09151 0.89566 0.99240 1.23158 1.05807 1.00880 0.85697 1.45979 1.43079 1.07656 1.08917 1.22749 1.03104 0.84025 0.91028 1.19002 0.84769 0.95340 0.95625 1.20368 1.04588 1.08037 1.19752 0.91762 1.24991 0.95215 0.96532 0.96571 1.69621 1.12747 1.34178 1.33778 0.86544 0.77611 0.83202 0.79999 1.21112 1.20186 1.20237 1.22813 1.06199 0.94812 0.97132 1.23160 1.02645 1.05664 0.94848 0.85518 0.84996 0.84905 0.81186 0.80676 0.82746 0.90225 0.92432 0.90210 0.92309 0.91285 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -8.08 10.80 101.05 1.09 -6.99 16 2 S 2.51 44.55 5.37 -107.50 -0.58 43.97 16 3 O -0.93 -18.66 17.93 -57.54 -1.03 -19.69 16 4 O -0.86 -18.26 12.85 -57.54 -0.74 -19.00 16 5 C -0.34 -6.54 6.14 -90.38 -0.55 -7.10 16 6 N -0.42 -8.09 11.23 -13.85 -0.16 -8.25 16 7 C -0.05 -0.82 11.87 -17.81 -0.21 -1.03 16 8 C -0.01 -0.22 9.46 -16.56 -0.16 -0.38 16 9 N -0.38 -7.27 1.95 -117.60 -0.23 -7.50 16 10 C 0.11 2.35 4.84 -4.04 -0.02 2.33 16 11 C 0.05 1.28 2.14 -155.65 -0.33 0.95 16 12 C -0.49 -12.63 9.03 -34.44 -0.31 -12.94 16 13 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 14 C 0.07 1.79 5.31 -17.82 -0.09 1.69 16 15 N -0.87 -21.80 10.73 55.43 0.59 -21.20 16 16 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 17 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.17 -4.11 8.20 -26.73 -0.22 -4.33 16 21 C -0.23 -4.97 9.58 -26.73 -0.26 -5.23 16 22 H 0.13 1.35 8.14 -51.92 -0.42 0.93 16 23 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 25 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 27 H 0.16 3.43 4.29 -51.93 -0.22 3.21 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.27 6.37 8.32 -40.82 -0.34 6.03 16 30 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 31 H 0.06 1.39 4.84 -51.93 -0.25 1.14 16 32 H 0.07 1.42 5.76 -51.93 -0.30 1.12 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -31.80 284.27 -7.64 -39.44 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -3.70 Total: 6.21 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: -1.07 Total: -33.02 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.21 Total: -36.94 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.77 Total: -38.68 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 44.55 SS G_CDS: -0.58 Total: 43.97 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.80 -7.64 -39.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594889523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.137 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds